rRDPData

This is the released version of rRDPData; for the devel version, see rRDPData.

Databases for the Default RDP Classifier

Bioconductor version: Release (3.20)

The package provides the data for the RDP Classifier 2.14 released in August 2023. It contains the latest bacterial and archaeal taxonomy training set No. 19 as described in Wang Q, Cole JR. 2024. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc 0:e01063-23.

Author: Michael Hahsler [aut, cre] , Nagar Anurag [aut]

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Citation (from within R, enter citation("rRDPData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rRDPData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, MicrobiomeData, RNASeqData, SequencingData
Version	1.26.0
License	GPL-2
Depends	rRDP
Imports
System Requirements
URL	https://github.com/mhahsler/rRDP

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	rRDP
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rRDPData_1.26.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rRDPData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rRDPData
Package Short Url	https://bioconductor.org/packages/rRDPData/
Package Downloads Report	Download Stats