hbTestResults-class {GGtools} | R Documentation |
Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block
Objects can be created by calls of the form new("hbTestResults", ...)
.
hscores
:"list"
series of
haplo.stats:::haplo.score results for blocks locs
:"numeric"
locations
at which blocks were found (mean location within each block) chrnum
:"chrnum"
chromosome
being analyzed smlSetName
:"character"
name
of the smlSet-class
harboring data in use rsid
:"ANY"
can be
a dbSNP id to use as an anchor, or a number constituting
absolute chromosomal location at which blocks will be
sought rad
:"numeric"
radius
in base pairs around the rsid
to be searched for blocks ldStruc
:"ANY"
the result
of the mapLD:::mapLD function signature(x = "hbTestResults")
: extracts
p-values for global score tests, one per block signature(x = "hbTestResults")
: extracts
locations of haplotype blocks found (average SNP location within block) signature(x = "hbTestResults")
: extracts
haplo.score
results as a list, for all blocksVJ Carey <stvjc@channing.harvard.edu>
showClass("hbTestResults")