GGtools-package {GGtools}R Documentation

GGtools Package Overview

Description

GGtools Package Overview

Details

This package provides facilities for analyzing relationships between gene expression distributions (singly or in groups) and SNP genotype series (chromosome-specific or genome-wide). The gwSnpTests method is the primary interface.

Important data classes in use: smlSet-class, gwSnpScreenResult-class, defined in GGBase package.

Main data sets: hmceuB36.2021, an excerpt based on chromosomes 20 and 21, with genotypes for all phase II HapMap SNP and full expression data for 90 CEU HapMap cohort members.

Introductory information is available from vignettes, type openVignette().

Full listing of documented articles is available in HTML view by typing help.start() and selecting GGtools package from the Packages menu or via library(help="GGtools").

Author(s)

V. Carey


[Package GGtools version 3.2.0 Index]