hbTestResults-class {GGtools}R Documentation

Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block

Description

Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block

Objects from the Class

Objects can be created by calls of the form new("hbTestResults", ...).

Slots

hscores:
Object of class "list" series of haplo.stats:::haplo.score results for blocks
locs:
Object of class "numeric" locations at which blocks were found (mean location within each block)
chrnum:
Object of class "chrnum" chromosome being analyzed
smlSetName:
Object of class "character" name of the smlSet-class harboring data in use
rsid:
Object of class "ANY" can be a dbSNP id to use as an anchor, or a number constituting absolute chromosomal location at which blocks will be sought
rad:
Object of class "numeric" radius in base pairs around the rsid to be searched for blocks
ldStruc:
Object of class "ANY" the result of the mapLD:::mapLD function

Methods

pvals
signature(x = "hbTestResults"): extracts p-values for global score tests, one per block
locs
signature(x = "hbTestResults"): extracts locations of haplotype blocks found (average SNP location within block)
hscores
signature(x = "hbTestResults"): extracts haplo.score results as a list, for all blocks

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Examples

showClass("hbTestResults")

[Package GGtools version 3.2.0 Index]