plot.stamPrediction           package:stam           R Documentation

_S_c_a_t_t_e_r _P_l_o_t _o_n _N_o_d_e _R_e_s_u_l_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Plots nodewise performance vs. redundancy as well as nodewise
     sensitivity vs.  specificity side by side.

_U_s_a_g_e:

     ## S3 method for class 'stamPrediction':
     plot(x, outfile = NULL, aclass = NULL, 
                         main = NULL, minspec = 0.9, 
                         minsens = 0.1, maxsens = 1, 
                         res = 72, ps = FALSE, pointsize = 12, 
                         ...)

_A_r_g_u_m_e_n_t_s:

       x: object of class stamPrediction to be plotted

 outfile: name of output file if postscript or PNG graphics is to be
          generated.  The extension of the file is chosen automatically
          according to the 'ps' argument. If no outfile is specified,
          an interactive plot is attempted

  aclass: the name of the phenotype class of interest, usually the
          disease class. If set to NULL the first class in
          lexicographical order is chosen.

    main: the main title of the plot, generated automatically if left
          blank

 minspec: if given the corresponding horizontal line is drawn in the
          sensitivity  vs. specificity plot

 minsens: if given the corresponding vertical line is drawn in the
          sensitivity  vs. specificity plot

 maxsens: if given the corresponding vertical line is drawn in the
          sensitivity  vs. specificity plot

     res: resolution in points per inch

      ps: if set to TRUE postscript output is generated

pointsize: the standard fontsize

     ...: additional arguments to be passed to plot

_A_u_t_h_o_r(_s):

     Claudio Lottaz

_S_e_e _A_l_s_o:

     'stam.predict'

