stamINode-class             package:stam             R Documentation

_I_n_n_e_r _N_o_d_e_s _i_n _C_l_a_s_s_i_f_i_e_r _N_e_t_s _b_y _S_t_A_M

_D_e_s_c_r_i_p_t_i_o_n:

     Objects of this class represent inner nodes of classifier nets as
     they are generated by structured analysis of microarray data.
     These nodes only contain children but never  hold direct
     annotations of genes.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form  'new("stamINode", ID,
     GOidx, children)'.

     _I_D is the GO identifier as character string

     _G_O_i_d_x environment attributing indices to all GO indentifiers

     _c_h_i_l_d_r_e_n indeces of all children

     Exactly one of 'GOidx' and 'children' must be defined, the other
     set to NULL (default)

_S_l_o_t_s:


     '_c_h_i_l_d_r_e_n': Object of class '"numeric"', indeces of the node's 
          direct children in the Gene Ontology.

     '_w_e_i_g_h_t_s': Object of class '"numeric"', weights attributed to the 
          node's direct children.

     See 'stamNode-class' fot 'ID', 'category', 'replacedParents' and 
     'supNode'.

_E_x_t_e_n_d_s:

     Class '"stamNode"', directly.

_M_e_t_h_o_d_s:


     _p_r_i_n_t 'signature(x = "stamINode")': print information on the inner
          node.

     _w_r_i_t_e_H_T_M_L 'signature(x = "stamINode")': generate HTML information
          on the inner node.

_A_u_t_h_o_r(_s):

     Claudio Lottaz

_S_e_e _A_l_s_o:

     'stamNode-class', 'stamLeaf-class'

