stam.writeHTML             package:stam             R Documentation

_W_r_i_t_e _S_t_A_M _O_u_t_p_u_t _i_n _H_T_M_L

_D_e_s_c_r_i_p_t_i_o_n:

     Write HTML output for various pieces of a structured analysis of
     microarray data for  further interactive exploration.

_U_s_a_g_e:

     stam.writeHTML(x, title = NULL, align = "left", 
                    outfile = "index.html", nonodes = FALSE, ...)

_A_r_g_u_m_e_n_t_s:

       x: the piece of the analysis for which HTML is to be generated.
          It may be of any  of the following classes: 'stamNode',
          'stamNet', 'stamCV',  'stamFit', 'stamPrediction' or
          'stamEval'

   title: the title to be used on the generated main page. A default is
          generated  according to a few important parameters of 'x'

   align: alignment of the tatle (left, right, center)

 outfile: the file where to store the generated HTML code unless 'x' is
          of  class 'stamEval'. In the latter case, 'outfile' is a
          directory where the  the collection of files is stored. 

 nonodes: whether to generate (possibly lengthy) output for all nodes

     ...: further arguments passed to 'writeHTML' calls.

_D_e_t_a_i_l_s:

     Use this function to generate HTML pages for further investigation
     of StAM results. The  pages are interlinked and contain links to
     external resources such as the Gene Ontology  and the Affymetrix
     website. Clickable maps are generated for the illustration of the 
     model fit as well as the molecular symptoms image.

_A_u_t_h_o_r(_s):

     Claudio Lottaz

_E_x_a_m_p_l_e_s:

     ## Not run: 
     data(golubTrain.cv)
     data(golubTrain.fit)

     stam.writeHTML(golubTrain.cv)
     stam.writeHTML(golubTrain.fit, nonodes=TRUE)
     ## End(Not run)

