dfMAplot            package:oneChannelGUI            R Documentation

_M_A _a_n_d _V_o_l_c_a_n_o _p_l_o_t_s _f_r_o_m _d_a_t_a _p_r_e_s_e_n_t _i_n _a _l_i_m_m_a _d_e_r_i_v_e_d _t_o_p_T_a_b_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     MA and Volcano plots can be generated starting from limma results
     summarized in a topTable. Specific subsets of the topTable defined
     by p-value below an user-defined threshold and/or log2 fold
     changes over an user-defined threshold can be saved. The subset of
     data can be saved as a tab delimited file

_U_s_a_g_e:

     dfMAplot(table1)

_A_r_g_u_m_e_n_t_s:

  table1: topTable data.frame generate by affylmGUI

_N_o_t_e:

     To know more about topTable see limma help

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

