mapping2exon          package:oneChannelGUI          R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _m_a_p_s _o_n _e_x_o_n-_l_e_v_e_l _P_r_o_b_e _S_e_l_e_c_t_i_o_n _R_e_g_i_o_n (_P_S_R) _s_t_a_r_t_i_n_g _f_o_r _t_h_e _f_i_l_e _p_r_o_d_u_c_e_d _b_y _f_u_n_c_t_i_o_n 
_o_n_e_C_h_a_n_n_e_l_G_U_I: _M_a_p_p_i_n_g _e_x_o_n _l_e_v_e_l _p_r_o_b_e _s_e_t_s _t_o _R_e_f_e_r_e_n_c_e _S_e_q_u_e_n_c_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function retrieve from RRE the PSR sequences associated to
     the exon-level probe sets and all exons associated to the gene
     associated to PRS. Subsequently identify the exon  where PSR maps
     and procuces a  fasta file were are located exon-level PSR and
     target exon. The mapping is done using the countPattern function
     of the Biostrings package. Up to three mismathces are allowed in
     PSR mapping on exonic sequence.

_U_s_a_g_e:

     mapping2exon()

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

