masigpro.edesign {oneChannelGUI} | R Documentation

## The function creates an edesign object needed to run maSigPro

### Description

The function creates an edesign object needed to run maSigPro. To know more about edesign object see maSigPro help. This function uses a specific configuration of Target column of the affylmGUI target file. To know more about target file see affylmGUI help. Each row of the column named Target, in the affylmGUI target file, describes the array on the basis of the experimental design. Each element needed for the construction of edesign is separated from the others by an underscore. The first three elements of the row are fixed and represent Time Replicate Control all separated by an underscore: verb+Time_Replicate_Control+ . All the other elements refer to various experimental conditions. Considering two different conditions to be evaluated each row is made of 5 elements: verb+Time_Replicate_Control_cond1_cond2+ all separated by an underscore. Having an experiment made of 9 arrays, with two time points, 0h and 24h, in triplicate, and two different experimental conditions to be evaluated, the affylmGUI target file will look like: Name FileName Target mC1 M1.CEL verb+0_1_1_0_0+ mC2 M4.CEL verb+0_1_1_0_0+ mC3 M7.CEL verb+0_1_1_0_0+ mE1 M3.CEL verb+24_2_0_1_0+ mE2 M6.CEL verb+24_2_0_1_0+ mE3 M9.CEL verb+24_2_0_1_0+ mI1 M2.CEL verb+24_3_0_0_1+ mI2 M5.CEL verb+24_3_0_0_1+ mI3 M8.CEL verb+24_3_0_0_1+

### Usage

    masigpro.edesign()

### Author(s)

Raffaele A Calogero

### See Also

masigpro, masigpro.view

[Package oneChannelGUI version 1.8.10 Index]