mapping2RefSeq         package:oneChannelGUI         R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _m_a_p_s _o_n _N_C_B_I _R_e_f_e_r_e_n_c_e _s_e_q_u_e_n_c_e_s _s_p_l_i_c_e_d _e_x_o_n_s _d_e_t_e_c_t_e_d _b_y _t_h_e 
_f_u_n_c_t_i_o_n _o_n_e_C_h_a_n_n_e_l_G_U_I: _I_n_s_p_e_c_t_i_n_g _s_p_l_i_c_e _i_n_d_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function retrieve from RRE the PSR sequences associated to
     the exon-level probe sets using blastn detects the best refseq
     associated to any of the exon-level probe sets retrieve from
     org.XX.eg.db the EG associated to any of the detected refseq and
     retrieves all the refseqs associated to the EG. Subsequently check
     if PSR maps on all the refseqs associated to the eg (conserved
     exon) or only some of them (isoform specific exon)

_U_s_a_g_e:

     mapping2RefSeq()

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

