ML.edesign {oneChannelGUI} | R Documentation

## The function creates an data frame containing the parameters useful for class prediction

### Description

This function uses a specific configuration of Target column of the affylmGUI target file. To know more about target file see affylmGUI help. Each row of the column named Target, in the affylmGUI target file, describes the array on the basis of the experimental design. Each element needed for the construction of the data frame is separated from the others by an underscore. All the other elements refer to experimental conditions or clinical parameters. The absence of a parameter NEEDS to be described in the Target file by NA Considering two different conditions to be evaluated each row is made of 5 elements: verb+Time_Replicate_Control_cond1_cond2+ all separated by an underscore. Having an experiment made of 9 arrays with 4 different experimental parameters the affylmGUI target file will look like: Name FileName Target mC1 M1.CEL verb+0_1_pos_0_NA+ mC2 M4.CEL verb+0_1_pos_0_yes+ mC3 M7.CEL verb+0_1_neg_0_no+ mE1 M3.CEL verb+24_2_neg_1_NA+ mE2 M6.CEL verb+24_2_NA_1_yes+ mE3 M9.CEL verb+24_2_neg_1_yes+ mI1 M2.CEL verb+12_3_0_pos_yes+ mI2 M5.CEL verb+12_3_0_pos_no+ mI3 M8.CEL verb+12_3_0_pos_no+

### Usage

    ML.edesign()

### Author(s)

Raffaele A Calogero

[Package oneChannelGUI version 1.8.10 Index]