ML.edesign           package:oneChannelGUI           R Documentation

_T_h_e _f_u_n_c_t_i_o_n _c_r_e_a_t_e_s _a_n _d_a_t_a _f_r_a_m_e _c_o_n_t_a_i_n_i_n_g _t_h_e _p_a_r_a_m_e_t_e_r_s _u_s_e_f_u_l _f_o_r _c_l_a_s_s _p_r_e_d_i_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     This function uses a specific configuration of Target column of
     the affylmGUI target file. To know more about target file see
     affylmGUI help. Each row of the column named Target, in the
     affylmGUI target file, describes the array on the basis of the
     experimental design. Each element needed for the construction of
     the data frame is separated from the others by an underscore.  All
     the other elements refer to experimental conditions or clinical
     parameters. The absence of a parameter NEEDS to be described in
     the Target file by NA Considering two different conditions to be
     evaluated each row is made of 5 elements:
     \verb+Time_Replicate_Control_cond1_cond2+ all separated by an
     underscore. Having an experiment made of 9 arrays with 4 different
     experimental parameters  the affylmGUI target file will look like:
     Name   FileName        Target mC1    M1.CEL  \verb+0_1_pos_0_NA+
     mC2    M4.CEL  \verb+0_1_pos_0_yes+ mC3    M7.CEL 
     \verb+0_1_neg_0_no+ mE1    M3.CEL  \verb+24_2_neg_1_NA+ mE2   
     M6.CEL  \verb+24_2_NA_1_yes+ mE3    M9.CEL  \verb+24_2_neg_1_yes+
     mI1    M2.CEL  \verb+12_3_0_pos_yes+ mI2    M5.CEL 
     \verb+12_3_0_pos_no+ mI3    M8.CEL  \verb+12_3_0_pos_no+

_U_s_a_g_e:

     ML.edesign()

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

