# Resampling-based multiple hypothesis testing

## Documentation for package ‘multtest’ version 1.22.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

as.list | Methods for MTP objects in Package ‘multtest’
as.list,MTP-method | Methods for MTP objects in Package ‘multtest’
as.list-methods | Methods for MTP objects in Package ‘multtest’
golub | Gene expression dataset from Golub et al. (1999)
mt.maxT | Step-down maxT and minP multiple testing procedures
mt.minP | Step-down maxT and minP multiple testing procedures
mt.plot | Plotting results from multiple testing procedures
mt.rawp2adjp | Adjusted p-values for simple multiple testing procedures
mt.reject | Identity and number of rejected hypotheses
mt.sample.label | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.rawp | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.teststat | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.teststat | Computing test statistics for each row of a data frame
mt.teststat.num.denum | Computing test statistics for each row of a data frame
MTP | A function to perform resampling-based multiple hypothesis testing
MTP-class | Class "MTP", classes and methods for multiple testing procedure output
MTP-methods | Methods for MTP objects in Package ‘multtest’
plot | Methods for MTP objects in Package ‘multtest’
plot,MTP-method | Methods for MTP objects in Package ‘multtest’
plot-methods | Methods for MTP objects in Package ‘multtest’
print,MTP-method | Methods for MTP objects in Package ‘multtest’
print-methods | Methods for MTP objects in Package ‘multtest’
print.MTP | Methods for MTP objects in Package ‘multtest’
summary | Methods for MTP objects in Package ‘multtest’
summary,MTP-method | Methods for MTP objects in Package ‘multtest’
summary-methods | Methods for MTP objects in Package ‘multtest’
update | Methods for MTP objects in Package ‘multtest’
update,MTP-method | Methods for MTP objects in Package ‘multtest’
update-methods | Methods for MTP objects in Package ‘multtest’
[,MTP-method | Methods for MTP objects in Package ‘multtest’
[-methods | Methods for MTP objects in Package ‘multtest’