RatioSnpSet-class          package:SNPchip          R Documentation

_C_l_a_s_s _f_o_r _h_i_g_h _t_h_r_o_u_g_h_p_u_t _S_N_P-_l_e_v_e_l _d_a_t_a.  _T_h_e _a_s_s_a_y _d_a_t_a
_c_o_n_t_a_i_n_s _r_a_t_i_o_s _o_f _c_o_p_y _n_u_m_b_e_r.

_D_e_s_c_r_i_p_t_i_o_n:

     Container for high throughput SNP data for platforms that provide
     ratios as SNP-level summaries of copy number

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("RatioSnpSet",
     calls, callsConfidence, ratio, ratioConfidence, ...)'.

_S_l_o_t_s:


     '_a_s_s_a_y_D_a_t_a': Object of class '"AssayData"' 

     '_p_h_e_n_o_D_a_t_a': Object of class '"AnnotatedDataFrame"' 

     '_f_e_a_t_u_r_e_D_a_t_a': Object of class '"AnnotatedDataFrame"' 

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': Object of class '"MIAME"' 

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"' 

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"'

_E_x_t_e_n_d_s:

     Class 'SnpLevelSet', directly. Class 'eSet',  by class
     "SnpLevelSet", distance 2. Class 'VersionedBiobase', by class
     "SnpLevelSet", distance 3. Class 'Versioned', by class
     "SnpLevelSet", distance 4.

_M_e_t_h_o_d_s:


     _c_n_C_o_n_f_i_d_e_n_c_e 'signature(object = "RatioSnpSet")': Accessor for
          confidence scores for the ratios 

     _c_n_C_o_n_f_i_d_e_n_c_e<- 'signature(object = "RatioSnpSet", value =
          "matrix")': Replacement method for ratio confidence scores

     _c_o_p_y_N_u_m_b_e_r 'signature(object = "RatioSnpSet")': Accessor for
          ratios.  See also 'ratio'.

     _c_o_p_y_N_u_m_b_e_r<- 'signature(object = "RatioSnpSet", value =
          "matrix")': Replacement method for ratios. 

     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "RatioSnpSet")'

     _r_a_t_i_o_C_o_n_f_i_d_e_n_c_e 'signature(object = "RatioSnpSet")': Accessor for
          confidence scores of the ratios.  See also 'cnConfidence'.

_A_u_t_h_o_r(_s):

     RS

_S_e_e _A_l_s_o:

     'RatioSnpSet-methods'

_E_x_a_m_p_l_e_s:

     showClass("RatioSnpSet")

