\HeaderA{ParESet-class}{Class "ParESet"}{ParESet.Rdash.class}
\aliasA{\$,ParESet-method}{ParESet-class}{.Rdol.,ParESet.Rdash.method}
\aliasA{\$<-,ParESet-method}{ParESet-class}{.Rdol.<.Rdash.,ParESet.Rdash.method}
\aliasA{hmmPredict,ParESet-method}{ParESet-class}{hmmPredict,ParESet.Rdash.method}
\aliasA{initialize,ParESet-method}{ParESet-class}{initialize,ParESet.Rdash.method}
\aliasA{plotSnp,ParESet,SnpLevelSet-method}{ParESet-class}{plotSnp,ParESet,SnpLevelSet.Rdash.method}
\aliasA{snpPar,ParESet-method}{ParESet-class}{snpPar,ParESet.Rdash.method}
\aliasA{snpPar<-,ParESet-method}{ParESet-class}{snpPar<.Rdash.,ParESet.Rdash.method}
\aliasA{snpset,ParESet-method}{ParESet-class}{snpset,ParESet.Rdash.method}
\keyword{classes}{ParESet-class}
\begin{Description}\relax
A class containing a list of graphical parameters for
plotting objects extending \code{SnpLevelSet}
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("ParESet", layout, col.axis, cex.main, cex.axis, cex.legend, cex, cex.lab, pch, col, bg, xaxs, xaxt, yaxs, yaxt, lab, adj, bty, ann, useLayout, mar, oma, las, log, ylab, side.ylab, outer.ylab, line.ylab, cex.ylab, xlab, outer.xlab, side.xlab, cex.xlab, line.xlab, outer.axis, line.axis, main, col.centromere, border.centromere, xlim, ylim, one.ylim, add.cytoband, outer.cytoband, outer.cytoband.axis, label.cytoband, use.chromosome.size, label.chromosome, line.label.chromosome, xaxis.side, alternate.xaxis.side, mat, heights, widths, respect, firstChromosome, ...)}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{snpPar}:] Object of class \code{list}
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[hmmPredict] \code{signature(object="ParESet")}: Accessor for
\code{HmmPredict} instance.  See also \code{\LinkA{hmmPredict}{hmmPredict}}
\item[initialize] \code{signature(.Object = "ParESet")}
\item[plotSnp] \code{ParESet, SnpLevelSet}:See also \code{\LinkA{plotSnp}{plotSnp}}
\item[snpPar] \code{signature(object = "ParESet")}
\item[snpPar<-] \code{signature(object = "ParESet")}
\item[snpset] \code{signature(object="ParESet")}: Accessor for
SNP data (\code{SnpLevelSet} instance).  See \code{\LinkA{snpset}{snpset}}.
}
\end{Section}
\begin{Author}\relax
R. Scharpf
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{ParSnpCallSet-class}{ParSnpCallSet.Rdash.class}},
\code{\LinkA{ParSnpCopyNumberSet-class}{ParSnpCopyNumberSet.Rdash.class}},
\code{\LinkA{ParSnpSet-class}{ParSnpSet.Rdash.class}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
showClass("ParESet")
\end{ExampleCode}
\end{Examples}

