\HeaderA{HmmPredict-class}{Class for containing output from a hidden Markov fit to SNP-level
data of genotype calls and copy number estimates}{HmmPredict.Rdash.class}
\keyword{classes}{HmmPredict-class}
\begin{Description}\relax
Container for HMM predictions
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("HmmPredict", assayData, phenoData, featureData, experimentData, annotation, ...)}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{states}:] Object of class \code{"character"}  
\item[\code{breakpoints}:] Object of class \code{"data.frame"} 
\item[\code{assayData}:] Object of class \code{"AssayData"} 
\item[\code{phenoData}:] Object of class \code{"AnnotatedDataFrame"} 
\item[\code{featureData}:] Object of class \code{"AnnotatedDataFrame"} 
\item[\code{experimentData}:] Object of class \code{"MIAME"} 
\item[\code{annotation}:] Object of class \code{"character"}  
\item[\code{.\_\_classVersion\_\_}:] Object of class \code{"Versions"} 
}
\end{Section}
\begin{Section}{Extends}
Class \code{\LinkA{SnpLevelSet}{SnpLevelSet}}, directly.
Class \code{NULLorHmmPredict}, directly.
Class \code{\LinkA{eSet}{eSet}},  by class "SnpLevelSet", distance 2.
Class \code{\LinkA{VersionedBiobase}{VersionedBiobase}}, by class "SnpLevelSet", distance 3.
Class \code{\LinkA{Versioned}{Versioned}}, by class "SnpLevelSet", distance 4.
\end{Section}
\begin{Section}{Methods}
No methods defined with class "HmmPredict" in the signature.
\end{Section}
\begin{Author}\relax
RS
\end{Author}
\begin{Examples}
\begin{ExampleCode}
showClass("HmmPredict")
\end{ExampleCode}
\end{Examples}

