\HeaderA{RatioSnpSet-methods}{Accessors for RatioSnpSet objects}{RatioSnpSet.Rdash.methods}
\aliasA{cnConfidence,RatioSnpSet-method}{RatioSnpSet-methods}{cnConfidence,RatioSnpSet.Rdash.method}
\aliasA{cnConfidence<-,RatioSnpSet,matrix-method}{RatioSnpSet-methods}{cnConfidence<.Rdash.,RatioSnpSet,matrix.Rdash.method}
\aliasA{copyNumber,RatioSnpSet-method}{RatioSnpSet-methods}{copyNumber,RatioSnpSet.Rdash.method}
\aliasA{copyNumber<-,RatioSnpSet,matrix-method}{RatioSnpSet-methods}{copyNumber<.Rdash.,RatioSnpSet,matrix.Rdash.method}
\aliasA{initialize,RatioSnpSet-method}{RatioSnpSet-methods}{initialize,RatioSnpSet.Rdash.method}
\aliasA{ratio}{RatioSnpSet-methods}{ratio}
\aliasA{ratio,RatioSnpSet-method}{RatioSnpSet-methods}{ratio,RatioSnpSet.Rdash.method}
\aliasA{ratio,SnpLevelSet-method}{RatioSnpSet-methods}{ratio,SnpLevelSet.Rdash.method}
\aliasA{ratio<\Rdash}{RatioSnpSet-methods}{ratio<.Rdash.}
\aliasA{ratio<-,SnpLevelSet,matrix-method}{RatioSnpSet-methods}{ratio<.Rdash.,SnpLevelSet,matrix.Rdash.method}
\aliasA{ratioConfidence}{RatioSnpSet-methods}{ratioConfidence}
\aliasA{ratioConfidence,RatioSnpSet-method}{RatioSnpSet-methods}{ratioConfidence,RatioSnpSet.Rdash.method}
\aliasA{ratioConfidence<\Rdash}{RatioSnpSet-methods}{ratioConfidence<.Rdash.}
\aliasA{ratioConfidence<-,RatioSnpSet,matrix-method}{RatioSnpSet-methods}{ratioConfidence<.Rdash.,RatioSnpSet,matrix.Rdash.method}
\keyword{manip}{RatioSnpSet-methods}
\begin{Description}\relax
Accessors and replacement methods for RatioSnpSet objects.
\end{Description}
\begin{Usage}
\begin{verbatim}
        ratio(object)
        ratio(object)<-value
        ratioConfidence(object)
        ratioConfidence(object) <- value
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] \code{RatioSnpSet} object
\item[\code{value}] matrix
\end{ldescription}
\end{Arguments}
\begin{Value}
Matrix with R rows (SNPs) and C columns (Samples) containing ratios
of allele intensities
\end{Value}

