GBM                   package:SMAP                   R Documentation

_G_l_i_o_b_l_a_s_t_o_m_a _m_u_l_t_i_f_o_r_m_e _a_r_r_a_y _C_G_H _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Array CGH data measurements of glioblastoma multiforme sample
     G24460.

_U_s_a_g_e:

     data(GBM)

_S_o_u_r_c_e:

     Genome wide array CGH data from Diaz de Stahl, T., et _al_.
     (2005).

_R_e_f_e_r_e_n_c_e_s:

     Diaz de Stahl, T., et _al_. (2005) Chromosome 22 tiling-path
     array-CGH analysis identifies germ-line- and tumor-specific
     aberrations in patients with glioblastoma multiforme. _Genes
     Chromosomes Cancer_ *44*(2), 161-169

_S_e_e _A_l_s_o:

     'smap'

_E_x_a_m_p_l_e_s:

     data(GBM)
     observations <- SMAPObservations(value=as.numeric(GBM[,2]),
                                      chromosome=as.character(GBM[,3]),
                                      startPosition=as.numeric(GBM[,4]),
                                      endPosition=as.numeric(GBM[,5]),
                                      name="G24460",
                                      reporterId=as.character(GBM[,1]))
     plot(observations)

