\HeaderA{SMAPProfiles-class}{Class "SMAPProfiles"}{SMAPProfiles.Rdash.class}
\keyword{classes}{SMAPProfiles-class}
\begin{Description}\relax
Holds results from running \code{\LinkA{smap}{smap}}.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are not intended to be created directly but as a result from
running \code{\LinkA{smap}{smap}}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{.Data}:] Object of class \code{"list"} A list of objects
of class \code{\LinkA{SMAPProfile-class}{SMAPProfile.Rdash.class}}.
\item[\code{name}:] Object of class \code{"character"} The name of
the object.
}
\end{Section}
\begin{Section}{Extends}
Class \code{"list"}, from data part.
Class \code{"vector"}, by class \code{"list"}.
\end{Section}
\begin{Section}{Methods}
\describe{
\item[Q] \code{signature(object = "SMAPProfiles")}: Returns the
optimal state sequence of the list elements.
\item[observations] \code{signature(object = "SMAPProfiles")}:
Returns the observations of the list elements.
\item[name] \code{signature(object = "SMAPProfiles")}: Returns the
name of the profile.
\item[plot] \code{signature(x = "SMAPProfiles", y = "missing")}: A
plot method for the result profiles.
}
\end{Section}
\begin{Author}\relax
Robin Andersson, \email{robin.andersson@lcb.uu.se}
\end{Author}
\begin{References}\relax
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H.,
Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P.,
Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH
Copy Number Profiling, submitted
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{smap}{smap}},
\code{\LinkA{SMAPProfile-class}{SMAPProfile.Rdash.class}}
\end{SeeAlso}

