Atong	Atong
AtongFnDomain	AtongFnDomain
AtongPair	AtongPair
Boeke2006	Boeke
Boeke2006raw	Boeke
byComplex	byComplex
comemberIn	comemberIn
compare	compare
compare,siResult-method	compare
congruence	congruence
createSquareMatrix	createSquareMatrix
domainDist	domainDist
dSLAM	dSLAM.GPL1444
dSLAM.GPL1444	dSLAM.GPL1444
essglist	essglist
getAlignStats	seqMatcherAlign
getFASTAname	getFASTAname
getInteraction	getInteraction
getSharedDomains	getSharedDomains
getSharedInteraction	getSharedInteraction
getTestedPairs	getTestedPairs
getUniquePairs	getUniquePairs
gi2005	gi2005
gi2005.metadata	gi2005
gi2007	gi2007
gi2007.metadata	gi2007
gi2Interactome	gi2Interactome
hyperG	hyperG
iSummary	iSummary
modelSLGI	modelSLGI
normInteraction	normInteraction
plot	plot
plot,siResult,missing-method	plot
plot,siResult-method	plot
SDL	SDL
seqMatcherAlign	seqMatcherAlign
SGA	SGA
SGAraw	SGA
SGD.SL	SGD.SL
SGD.SynGrowthDefect	SGD.SL
SGD.SynRescue	SGD.SL
sharedBy	sharedBy
sharedInt	sharedInt
show,siResult-method	siResult-class
siResult-class	siResult-class
SLchr	SDL
test2Interact	test2Interact
TFmat	TFmat
tong2004raw	Atong
topInteraction	topInteraction
twoWayTable	twoWayTable
withinComplex	withinComplex
