domainDist               package:SLGI               R Documentation

_F_i_n_d_s _t_h_e _n_u_m_b_e_r _o_f _g_e_n_e _s_e_t_s _f_o_r _e_a_c_h _s_h_a_r_e_d _d_o_m_a_i_n

_D_e_s_c_r_i_p_t_i_o_n:

     'domainDist' takes a list of shared domains, and compute for each
     distinct domain how many gene sets share it.

_U_s_a_g_e:

     domainDist(domainL)

_A_r_g_u_m_e_n_t_s:

 domainL: Each element of the list is a vector of functional domains.

_D_e_t_a_i_l_s:

     For each domain that appears in the domain list, 'domainDist'
     counts the number of elements that have this domain.

_V_a_l_u_e:

     Returns a frequency table with descending order.

_A_u_t_h_o_r(_s):

     Z. Jiang

_S_e_e _A_l_s_o:

     'getSharedDomains', 'sharedBy'

_E_x_a_m_p_l_e_s:

     data(AtongFnDomain)
     domainDist(AtongFnDomain$SharedPfam[1:20])

