getSharedDomains            package:SLGI            R Documentation

_F_i_n_d _d_o_m_a_i_n_s _s_h_a_r_e_d _b_y _a _g_i_v_e_n _l_i_s_t _o_f _g_e_n_e _n_a_m_e_s.

_D_e_s_c_r_i_p_t_i_o_n:

     'getSharedDomains' finds domains in the provided environment that
     are shared by a list of genes.

_U_s_a_g_e:

     getSharedDomains(geneNameV, env)

_A_r_g_u_m_e_n_t_s:

geneNameV: Character vector of gene names.  

     env: R object that provides mappings between an entrez gene
          identifier and the associated Pfam identifiers.

_V_a_l_u_e:

     'getSharedDomains' returns a vector of the names of the shared
     domains.

_A_u_t_h_o_r(_s):

     Z. Jiang

_S_e_e _A_l_s_o:

     'domainDist', 'sharedBy'

_E_x_a_m_p_l_e_s:

     library("org.Sc.sgd.db")
     getSharedDomains(c("YEL003W","YLR200W"),  org.Sc.sgdPFAM)

