withinComplex              package:SLGI              R Documentation

_S_e_a_r_c_h _f_o_r _p_r_o_t_e_i_n _c_o-_m_e_m_b_e_r_s_h_i_p _w_i_t_h_i_n _c_o_m_p_l_e_x_e_s.

_D_e_s_c_r_i_p_t_i_o_n:

     Search for protein co-membership within one (or more) complex(es).

_U_s_a_g_e:

     withinComplex(data,interactome)

_A_r_g_u_m_e_n_t_s:

    data: Binary matrix of genes(proteins) linked to other
          genes(protein) by any biological experiment

interactome: Binary matrix composed of genes (rows) and biological
          complexes (columns) 'ScISI'

_V_a_l_u_e:

     Matrix of genes(proteins) co-member of one or more biological
     complexes.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     'byComplex'

_E_x_a_m_p_l_e_s:

       data(Atong)
       data(ScISIC)
       coMember <- withinComplex(Atong, ScISIC)
       table(coMember)
      

