topInteraction             package:SLGI             R Documentation

_E_x_t_r_a_c_t _i_n_t_e_r_a_c_t_i_n_g _b_i_o_l_o_g_i_c_a_l _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Extract the top X interacting biological complexes.

_U_s_a_g_e:

     topInteraction(data,top=10)

_A_r_g_u_m_e_n_t_s:

    data: Square matrix of biological complexes that shares one or more
          genes(proteins)

     top: Interger that represents the percentage of interacting
          complexe

_V_a_l_u_e:

     Data frame of biological complexes that interact. The first two
     columns are the cellular organizational units names and the third
     column indicates the number of interactions.

_A_u_t_h_o_r(_s):

     N. LeMeur

_E_x_a_m_p_l_e_s:

     data(Atong)
     data(ScISIC)
     data(SGA)
     SLa2 <- gi2Interactome(Atong, ScISIC)
     ## Search for synthetic lethal interaction
     compM <- getInteraction(SLa2, SGA, ScISIC)
     top10Interaction<- topInteraction(compM$bwMat,top=10)

