compare                 package:SLGI                 R Documentation

_C_o_m_p_a_r_e _o_b_s_e_r_v_e_d _d_a_t_a _t_o _e_x_p_e_c_t_e_d _i_n _p_e_r_m_u_t_a_t_i_o_n _m_o_d_e_l_s

_D_e_s_c_r_i_p_t_i_o_n:

     This method summarizes the result of the 'modelSLGI' function.

_U_s_a_g_e:

     ## S4 method for signature 'siResult':
     compare(x)

_A_r_g_u_m_e_n_t_s:

       x: a 'siResult' object to summarize

_D_e_t_a_i_l_s:

     This compares the number of observed interactions to the number of
     expected interactions in each permutation model. It counts how
     many times the number of observed interactions is greater than the
     number of expected interactions (from the permutations) and
     divides by the number of permutations applied.

_V_a_l_u_e:

     Numerical vector

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     _modelSLGI_

_E_x_a_m_p_l_e_s:

     data(ScISIC)
     data(Atong)
     data(SGA)
     model <-  modelSLGI(Atong, universe= SGA, interactome=ScISIC, type="intM", perm=2)
     ans <- compare(model)

