\HeaderA{gi2005}{Genetic Interaction Data (EMAP) from the yeast early secretory pathway}{gi2005}
\methaliasA{gi2005.metadata}{gi2005}{gi2005.metadata}
\keyword{datasets}{gi2005}
\begin{Description}\relax
The data are in the form of a 424 by 424 array which contains the scores 
from using the EMAP procedure on yeast strains which are ideally double
mutants, each strain with a different pair of genes knocked out. For each
row, the gene named in the row label is knocked out in all pairs, and
the same holds true for each column.
\end{Description}
\begin{Usage}
\begin{verbatim}
 data(gi2005)
 data(gi2005.metadata)
\end{verbatim}
\end{Usage}
\begin{Format}\relax
\code{gi2005} is a 424 by 424 array of real values. 
\code{gi2005.metadata} is a vector of length 424 which contains
the common names for the genes that were knocked out. The row and 
column names of \code{gi2005} are standard names.
\end{Format}
\begin{Details}\relax
NA values in \code{gi2005} are interactions that were not scored.
\end{Details}
\begin{Source}\relax
Data were obtained as supplementary material from the publication listed
below.
\end{Source}
\begin{References}\relax
Schuldiner et al, Exploration of the function and organization of the yeast
early secretory pathway through an epistatic miniarray profile. Cell, 2005,
123:507-519.

Collins et al, A strategy for extracting and analyzing large-scale quantitative
epistatic interaction data. Genome Biology, 2006, 7:R63.
\end{References}
\begin{Examples}
\begin{ExampleCode}
data(gi2005)
data(gi2005.metadata)
\end{ExampleCode}
\end{Examples}

