gi2007                 package:SLGI                 R Documentation

_S_y_n_t_h_e_t_i_c _G_e_n_e_t_i_c _I_n_t_e_r_a_c_t_i_o_n _d_a_t_a _f_r_o_m _C_o_l_l_i_n_s _e_t _a_l

_D_e_s_c_r_i_p_t_i_o_n:

     The data 'gi2007' are a 754 by 754 set of genetic interactions
     that were tested pairwise by either deletion or decreased
     abundance messenger RNA perturbation.

_U_s_a_g_e:

       data(gi2007)
       data(gi2007.metadata)

_F_o_r_m_a_t:

     The 'gi2007' data are a 754 by 754 matrix where values indicate a
     score for a synthetic genetic interaction. An 'NA' indicates that
     the genetic interaction was not measured.

     'gi2007.metadata' is a data.frame of dimensions 754 rows and two
     columns. The columns are the systematic names and the mutation
     (which is typically either 'DAMP', 'DELETION' or the name of the
     alternate allele that was tested.  In 11 cases an alternative
     allele was tested.

_R_e_f_e_r_e_n_c_e_s:

     Collins et al. Nature, 2007, Vol 446, p. 806-810. Data are
     available as supplementary material.

_E_x_a_m_p_l_e_s:

     data(gi2007)
     data(gi2007.metadata)

