getSharedInteraction          package:SLGI          R Documentation

_C_a_l_c_u_l_a_t_e _t_h_e _n_u_m_b_e_r _o_f _s_h_a_r_e_d _s_y_n_t_h_e_t_i_c _g_e_n_e_t_i_c _i_n_t_e_r_a_c_t_i_o_n_s
_b_e_t_w_e_e_n _p_a_i_r_s _o_f _g_e_n_e_s.

_D_e_s_c_r_i_p_t_i_o_n:

     The number of common synthetic genetic interacting partners
     between two genes.

_U_s_a_g_e:

     getSharedInteraction(iMat, mode="query")

_A_r_g_u_m_e_n_t_s:

    iMat: Adjacency matrix reporting genetic Interactions. Each entry
          has value 0 or 1, representing positive or negative
          interaction of corresponding pairs of row and column,
          respectively.

    mode: Character vector of value "query" or "target"

_V_a_l_u_e:

     A numeric vector of the number of common genetic interactions
     between a pair of query or target genes.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     'congruence'

_E_x_a_m_p_l_e_s:

     intM <- matrix(c(0,1,0,0,1,1,1,0,1,0,0,1,1,0,1,0),
                     nrow=4, ncol=4, 
                     dimnames=list(c("p1","p2","p3","p4"),
                       c("p1","p3","p5","p7")))

     sharedInt <- getSharedInteraction(intM)

