translateIntactID          package:Rintact          R Documentation

_A _f_u_n_c_t_i_o_n _t_h_a_t _t_r_a_n_s_l_a_t_e_s _t_h_e _I_n_t_A_c_t _a_c_c_e_s_s_i_o_n _c_o_d_e_s _f_o_r 
_m_o_l_e_c_u_l_e_s _t_o _o_t_h_e_r _c_o_m_m_o_n _i_d_e_n_t_i_f_i_e_r_s.

_D_e_s_c_r_i_p_t_i_o_n:

     The 'translateIntactID' takes 3 parameters, either an intactGraph
     or intactHyperGraph S-4 Class, a vector of IntAct accession codes,
     and a vector of other identifiers. Then for the particular graph
     object,  translateIntactID will map those IntAct accession codes
     to the other identifiers if possible.

_U_s_a_g_e:

     translateIntactID(r,...)

_A_r_g_u_m_e_n_t_s:

       r: Either an intactGraph or intactHyperGraph S-4 Class.

     ...: The primary use of this generic are as methods for the in
          intactGraph S-4 class and the intactHyperGraph S-4 class. In
          both two more parameters need for the method. The first is
          "ebiNames" which is a character vector  of the IntAct
          accession codes to be mapped. The second is "toWhat" which 
          is a character vector of identifier names. These identifiers
          are limited to the following: "uniprotId", "geneName",
          "fullName",  "locusName", and "orfName"

_V_a_l_u_e:

     A character matrix. The rows are indexed by the IntAct accession
     codes supplied and the columns are indexed by the identifiers
     supplied.

_A_u_t_h_o_r(_s):

     T Chiang

_R_e_f_e_r_e_n_c_e_s:

     Rintact: enabling computational analysis of molecular interaction
     data from the IntAct repository - Tony Chiang; Nianhua Li; Sandra
     Orchard; Samuel  Kerrien; Henning Hermjakob; Robert Gentleman;
     Wolfgang Huber Bioinformatics 2007; doi:
     10.1093/bioinformatics/btm518.

_S_e_e _A_l_s_o:

     'intactGraph-class', 'intactHyperGraph-class'

_E_x_a_m_p_l_e_s:

     # parse complex data

