translateNodeID           package:Rintact           R Documentation

_A _f_u_n_c_t_i_o_n _t_h_a_t _t_r_a_n_s_l_a_t_e_s _t_h_e _I_n_t_A_c_t _a_c_c_e_s_s_i_o_n _I_D_s _i_n _a_n _i_n_t_a_c_t_G_r_a_p_h 
_t_o _o_t_h_e_r _c_o_m_m_o_n _i_d_e_n_t_i_f_i_e_r_s.

_D_e_s_c_r_i_p_t_i_o_n:

     The 'translateNodeID' takes 2 parameters, an intactGraph and the
     new ID to which the IntAct accession IDs should be translated. 
     Then for the particular graph object,  translateNodeID will map
     those IntAct accession codes to the other identifiers if possible
     and re-map the node names.

_U_s_a_g_e:

     translateNodeID(g,...)

_A_r_g_u_m_e_n_t_s:

       g: An intactGraph S-4 Class.

     ...: The primary use of this generic are as methods for the in
          intactGraph S-4 class and the intactHyperGraph S-4 class. In
          both an extra parameter,  newID, is needed to detail to what
          the IntAct accession ID should be mapped. These identifiers
          are limited to the following: "uniprotId", "geneName",
          "fullName",  "locusName", and "orfName"

_V_a_l_u_e:

     An 'intactGraph' S4-class with the nodes re-mapped to the user
     supplied identifiers.

_A_u_t_h_o_r(_s):

     T Chiang

_R_e_f_e_r_e_n_c_e_s:

     Rintact: enabling computational analysis of molecular interaction
     data from the IntAct repository - Tony Chiang; Nianhua Li; Sandra
     Orchard; Samuel  Kerrien; Henning Hermjakob; Robert Gentleman;
     Wolfgang Huber Bioinformatics 2007; doi:
     10.1093/bioinformatics/btm518.

_S_e_e _A_l_s_o:

     'intactGraph-class', 'intactHyperGraph-class'

_E_x_a_m_p_l_e_s:

     # parse complex data

