\HeaderA{complexEntry-class}{Class "complexEntry"}{complexEntry.Rdash.class}
\aliasA{complexes,complexEntry-method}{complexEntry-class}{complexes,complexEntry.Rdash.method}
\aliasA{interactors,complexEntry-method}{complexEntry-class}{interactors,complexEntry.Rdash.method}
\aliasA{show,complexEntry-method}{complexEntry-class}{show,complexEntry.Rdash.method}
\keyword{models}{complexEntry-class}
\begin{Description}\relax
A class representing the complex data extracted from an IntAct data file
in PSI-MI 2.5 format.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are usually created by \code{psi25complex}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{releaseDate}:] character, release date of the data file.
\item[\code{interactors}:] matrix. Each row represents one interactor. 
IntAct IDs are used as row names. Each column represents one annotation. 
Annotations include: UniProt ID, gene symbol, full name, locus name, 
ORF name, organism name, and NCBI taxonomy ID.
\item[\code{complexes}:] list, a list of \code{intactComplex} objects, 
each represents one complex. 
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[show] \code{signature(object = "complexEntry")}: a print method
\item[complexes] \code{signature(object = "complexEntry")}: a method to generate 
and print all the complexes to the complexEntry class
\item[interactors] \code{signature(object = "complexEntry")}: a method to generate
and print all the interactors for a complex in the complexEntry class
}
\end{Section}
\begin{Author}\relax
Nianhua Li
\end{Author}
\begin{References}\relax
The IntAct Database: \url{http://www.ebi.ac.uk/intact/site/contents/downloads.jsf}.
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{intactComplex-class}{intactComplex.Rdash.class}}, \code{\LinkA{psi25complex}{psi25complex}}
\end{SeeAlso}

