intactInteraction-class       package:Rintact       R Documentation

_C_l_a_s_s "_i_n_t_a_c_t_I_n_t_e_r_a_c_t_i_o_n"

_D_e_s_c_r_i_p_t_i_o_n:

     A class representing interaction data.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are usually created by 'psi25interaction'.

_S_l_o_t_s:


     '_i_n_t_a_c_t': character, IntAct ID of the interaction.

     '_i_n_t_e_r_a_c_t_i_o_n_T_y_p_e': character, the method used for detecting the
          interaction, such as pull down. 

     '_e_x_p_P_u_b_M_e_d': character, PubMed ID of the publication that
          describes the experiment.

     '_e_x_p_I_n_t_A_c_t': character, IntAct ID of the experiment.

     '_c_o_n_f_i_d_e_n_c_e_V_a_l_u_e': character, confidence value of the experimental
          interaction.

     '_b_a_i_t': character, UniProt ID of the bait.

     '_p_r_e_y': character, UniProt ID(s) of the prey(s).

     '_i_n_h_i_b_i_t_o_r': character, UniProt ID of the inhibitor, NA is
          missing.

     '_n_e_u_t_r_a_l_C_o_m_p_o_n_e_n_t': character, UniProt ID of the neutral
          components, NA is missing.

_M_e_t_h_o_d_s:


     _s_h_o_w 'signature(object = "intactInteraction")': a print method

     _b_a_i_t 'signature(object = "intactInteraction")': a method to find
          all the baits within the intactInteraction class and print
          them

     _p_r_e_y 'signature(object = "intactInteraction")': a method to find
          all the prey within the intactInteraction class and print
          them   


_A_u_t_h_o_r(_s):

     Nianhua Li

_S_e_e _A_l_s_o:

     'psi25interaction'

