\HeaderA{translateIntactID}{A function that translates the IntAct accession codes for 
molecules to other common identifiers.}{translateIntactID}
\keyword{models}{translateIntactID}
\begin{Description}\relax
The \code{translateIntactID} takes 3 parameters, either an intactGraph
or intactHyperGraph S-4 Class, a vector of IntAct accession codes, and
a vector of other identifiers. Then for the particular graph object, 
translateIntactID will map those IntAct accession codes to the other
identifiers if possible.
\end{Description}
\begin{Usage}
\begin{verbatim}
translateIntactID(r,...)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{r}] Either an intactGraph or intactHyperGraph S-4 Class.
\item[\code{...}] The primary use of this generic are as methods for the in intactGraph
S-4 class and the intactHyperGraph S-4 class. In both two more parameters
need for the method. The first is "ebiNames" which is a character vector 
of the IntAct accession codes to be mapped. The second is "toWhat" which 
is a character vector of identifier names. These identifiers
are limited to the following: "uniprotId", "geneName", "fullName", 
"locusName", and "orfName"
\end{ldescription}
\end{Arguments}
\begin{Value}
A character matrix. The rows are indexed by the IntAct accession codes supplied and
the columns are indexed by the identifiers supplied.
\end{Value}
\begin{Author}\relax
T Chiang
\end{Author}
\begin{References}\relax
Rintact: enabling computational analysis of molecular interaction data
from the IntAct repository - Tony Chiang; Nianhua Li; Sandra Orchard; Samuel 
Kerrien; Henning Hermjakob; Robert Gentleman; Wolfgang Huber
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm518.
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{intactGraph-class}{intactGraph.Rdash.class}}, \code{\LinkA{intactHyperGraph-class}{intactHyperGraph.Rdash.class}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
# parse complex data
\end{ExampleCode}
\end{Examples}

