complexEntry-class          package:Rintact          R Documentation

_C_l_a_s_s "_c_o_m_p_l_e_x_E_n_t_r_y"

_D_e_s_c_r_i_p_t_i_o_n:

     A class representing the complex data extracted from an IntAct
     data file in PSI-MI 2.5 format.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are usually created by 'psi25complex'.

_S_l_o_t_s:


     '_r_e_l_e_a_s_e_D_a_t_e': character, release date of the data file.

     '_i_n_t_e_r_a_c_t_o_r_s': matrix. Each row represents one interactor.  IntAct
          IDs are used as row names. Each column represents one
          annotation.  Annotations include: UniProt ID, gene symbol,
          full name, locus name,  ORF name, organism name, and NCBI
          taxonomy ID.

     '_c_o_m_p_l_e_x_e_s': list, a list of 'intactComplex' objects,  each
          represents one complex. 

_M_e_t_h_o_d_s:


     _s_h_o_w 'signature(object = "complexEntry")': a print method

     _c_o_m_p_l_e_x_e_s 'signature(object = "complexEntry")': a method to
          generate  and print all the complexes to the complexEntry
          class

     _i_n_t_e_r_a_c_t_o_r_s 'signature(object = "complexEntry")': a method to
          generate and print all the interactors for a complex in the
          complexEntry class

_A_u_t_h_o_r(_s):

     Nianhua Li

_R_e_f_e_r_e_n_c_e_s:

     The IntAct Database: <URL:
     http://www.ebi.ac.uk/intact/site/contents/downloads.jsf>.

_S_e_e _A_l_s_o:

     'intactComplex-class', 'psi25complex'

