\HeaderA{intactHyperGraph-class}{Class "intactHyperGraph"}{intactHyperGraph.Rdash.class}
\aliasA{initialize,intactHyperGraph-method}{intactHyperGraph-class}{initialize,intactHyperGraph.Rdash.method}
\aliasA{show,intactHyperGraph-method}{intactHyperGraph-class}{show,intactHyperGraph.Rdash.method}
\aliasA{translateIntactID,intactHyperGraph-method}{intactHyperGraph-class}{translateIntactID,intactHyperGraph.Rdash.method}
\keyword{models}{intactHyperGraph-class}
\begin{Description}\relax
A class representing the IntAct data as a hypergraph. It is a 
superclass of the hypergraph class.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are usually created by \code{intactXML2Graph}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{interactors}:] matrix, Each row represents one interactor. IntAct
IDs are used as row names. Each column represents one annotation. 
Annotations include: UniProt ID, gene symbol, full name, locus name, ORF name,
organism name, and NCBI taxonomy ID. Only those interactors which are 
the nodes of the intactGraph is given.
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[show] \code{signature(object = "intactHyperGraph")}: a print method
\item[initialize] a method to initialize an instance of an intactHyperGraph 
\item[translateIntactID] \code{signature(object = "intactHyperGraph")}:
a method to translate IntAct codes to the various annotations.
}
\end{Section}
\begin{Author}\relax
T Chiang
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{intactXML2Graph}{intactXML2Graph}}
\end{SeeAlso}

