# A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.

## Documentation for package ‘LPEadj’ version 1.2.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

adjBaseOlig.error | Evaluates LPE variance function of M for quantiles of A within and experimental condition and then interpolates it for all genes.
adjBaseOlig.error.step1 | Evaluates LPE variance function of M for quantiles of A within and experimental condition by divinding the A in 100 intervals.
adjBaseOlig.error.step2 | Evaluates LPE variance function of M for quantiles of A within and experimental condition. It is based on the adaptive number of intervals.
calculateLpeAdj | Evaluates local pooled error significance test with user chosen variance adjustments.
getCols | Get number of replicates from character vector
lpeAdj | High level lpeAdj function that executes the adjusted local pooled error significance test. If more control over parameters is needed then see documentation for calculateLpeAdj.