markerSummary          package:GeneticsBase          R Documentation

_G_e_n_e_r_a_t_e _a_l_l_e_l_e, _g_e_n_o_t_y_p_e, _o_r _L_D _s_u_m_m_a_r_y _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Generate allele, genotype, or LD summary objects

_U_s_a_g_e:

     markerSummary(object, 
                   covariate = NULL, 
                   confidence = 0.95, 
                   alpha = 1 - confidence, 
                   show = TRUE, 
                   ...)
     ## S3 method for class 'markerSummary':
     print(x, ...)

_A_r_g_u_m_e_n_t_s:

  object: 

covariate: 

confidence: desired confidence interval for genotype and allele
          frequencies in each marker

   alpha: Type -1 error rate = (1- confidence) 

    show: No longer used  

       x: object of class 'markerSummary' 

     ...: optional additional arguments

_D_e_t_a_i_l_s:

     We can print the alleleSummary and genotypeSummary on screen, or
     save in html, tex, or pdf format using appropriate methods.

_A_u_t_h_o_r(_s):

     Nitin Jain nitin.jain@pfizer.com

_E_x_a_m_p_l_e_s:

     library(GeneticsBase)
     data(CAMP)
     temp <- markerSummary(CAMP)

     print.markerSummary(temp)
     html.markerSummary(temp, filename="test")
     latex.markerSummary(temp, filename="test")

