\HeaderA{LDdist-class}{Wrapper to efficiently store the result from
performing LD calculatations over sliding windows containing markers
within a distance}{LDdist.Rdash.class}
\aliasA{head,LDdist-method}{LDdist-class}{head,LDdist.Rdash.method}
\aliasA{left,LDdist-method}{LDdist-class}{left,LDdist.Rdash.method}
\aliasA{right,LDdist-method}{LDdist-class}{right,LDdist.Rdash.method}
\aliasA{show,LDdist-method}{LDdist-class}{show,LDdist.Rdash.method}
\aliasA{tail,LDdist-method}{LDdist-class}{tail,LDdist.Rdash.method}
\keyword{classes}{LDdist-class}
\begin{Description}\relax
Wrapper to efficiently store the result from
performing LD calculatations over sliding windows containing markers
within a distance
\end{Description}
\begin{Section}{Slots}
\describe{
\item[\code{call}:] Function call used to generate this object.
\item[\code{D}:] Linkage disequilibrium estimate
\item[\code{D'}:] Scaled linkage disequilibrium estimate 
\item[\code{r}:] Correlation coefficient
\item[\code{R\textasciicircum{}2}:] squared correlation coefficient
\item[\code{n}:] Number of observations
\item[\code{X\textasciicircum{}2}:] Chi-square statistic for linkage
equilibrium (i.e., D=D'=corr=0)
\item[\code{P-value}:] Chi-square p-value for marker independence
\item[\code{LOD}:] LOD scores
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[head] \code{signature(x = "LDdist")}: see \code{\LinkA{head}{head}} 
\item[left] \code{signature(x = "LDdist")}: see \code{\LinkA{left}{left}} 
\item[right] \code{signature(x = "LDdist")}: see \code{\LinkA{right}{right}} 
\item[show] \code{signature(object = "LDdist")}: see \code{\LinkA{show}{show}} 
\item[tail] \code{signature(x = "LDdist")}: see \code{\LinkA{tail}{tail}} 
}
\end{Section}
\begin{Author}\relax
Initial version by Gregory R. Warnes
\email{warnes@bst.rochester.edu} and Nitin Jain
\email{nitin.jain@pfizer.com}, enhanced to use C routines by
Weiliang Qiu \email{stwxq@channing.harvard.edu},
and Ross Lazarus \email{ross.lazarus@channing.harvard.edu}
\end{Author}

