\HeaderA{extractAlleles}{functions for extracting allele levels, allele pairs, and allele codes}{extractAlleles}
\keyword{misc}{extractAlleles}
\begin{Description}\relax
functions for extracting allele levels, allele pairs, and allele codes
\end{Description}
\begin{Usage}
\begin{verbatim}
extractAlleles(object, which = c(1, 2), codes = FALSE,
allow.partial.missing = FALSE, marker, obs)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] geneSet object
\item[\code{which}] allele pair number - 1 or 2. Default if both
\item[\code{codes}] If FALSE (default), then calleles are shown as
characters, else numeric 
\item[\code{allow.partial.missing}] Whether partical matching should be
allowed ( default is FALSE) 
\item[\code{marker}] marker names 
\item[\code{obs}] Number of observations (samples) to be displayed. Default
is all.
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Gregory R. Warnes \email{warnes@bst.rochester.edu} and Nitin Jain \email{nitin.jain@pfizer.com}
\end{Author}

