\HeaderA{markerSummary}{Generate allele, genotype, or LD summary objects}{markerSummary}
\aliasA{print.markerSummary}{markerSummary}{print.markerSummary}
\keyword{misc}{markerSummary}
\begin{Description}\relax
Generate allele, genotype, or LD summary objects
\end{Description}
\begin{Usage}
\begin{verbatim}
markerSummary(object, 
              covariate = NULL, 
              confidence = 0.95, 
              alpha = 1 - confidence, 
              show = TRUE, 
              ...)
## S3 method for class 'markerSummary':
print(x, ...)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] 
\item[\code{covariate}] 
\item[\code{confidence}] desired confidence interval for genotype and allele
frequencies in each marker
\item[\code{alpha}] Type -1 error rate = (1- confidence) 
\item[\code{show}] No longer used  
\item[\code{x}] object of class 'markerSummary' 
\item[\code{...}] optional additional arguments
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
We can print the alleleSummary and genotypeSummary on screen, or save
in html, tex, or pdf format using appropriate methods.
\end{Details}
\begin{Author}\relax
Nitin Jain \email{nitin.jain@pfizer.com}
\end{Author}
\begin{Examples}
\begin{ExampleCode}

library(GeneticsBase)
data(CAMP)
temp <- markerSummary(CAMP)

print.markerSummary(temp)
html.markerSummary(temp, filename="test")
latex.markerSummary(temp, filename="test")

\end{ExampleCode}
\end{Examples}

