\HeaderA{BCRANKresult-class}{Class "BCRANKresult"}{BCRANKresult.Rdash.class}
\aliasA{BCRANKresult}{BCRANKresult-class}{BCRANKresult}
\aliasA{fname}{BCRANKresult-class}{fname}
\aliasA{toptable}{BCRANKresult-class}{toptable}
\keyword{classes}{BCRANKresult-class}
\begin{Description}\relax
Holds the results from running
\code{\LinkA{bcrank}{bcrank}. Contains a number of
        \bsl{}code\{\LinkA{bcrank}{bcrank}\} object,
        one for each restart of the bcrank search.}
\end{Description}
\begin{Section}{Slots}
\describe{
\item[\code{fname}:] The name of the fasta file used for running bcrank.
\item[\code{toplist}:] A list of \code{BCRANKsearch-class} objects,
ranked by their scores.
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[fname] \code{signature(object = "BCRANKmatch")}: Returns the
fasta file name.
\item[toplist] \code{signature(object = "BCRANKmatch", i=NULL)}: If
\code{i} is NULL, returns a data frame containing consensus and
score for the results for each restart of the bcrank
search. Otherwise, the i'th \code{BCRANKsearch-class} object in
the toplist is returned.
}
\end{Section}
\begin{Author}\relax
Adam Ameur, \email{adam.ameur@lcb.uu.se}
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{bcrank}{bcrank}},
\code{\LinkA{BCRANKsearch-class}{BCRANKsearch.Rdash.class}},
\end{SeeAlso}

