\HeaderA{BCRANKmatch-class}{Class "BCRANKmatch"}{BCRANKmatch.Rdash.class}
\aliasA{BCRANKmatch}{BCRANKmatch-class}{BCRANKmatch}
\aliasA{bcrankScore}{BCRANKmatch-class}{bcrankScore}
\aliasA{consensus}{BCRANKmatch-class}{consensus}
\aliasA{matchVector}{BCRANKmatch-class}{matchVector}
\keyword{classes}{BCRANKmatch-class}
\begin{Description}\relax
Holds the \code{\LinkA{bcrank}{bcrank}} score for one
IUPAC consensus sequence. Several objects of this class are
collected in a
\code{\LinkA{BCRANKsearch-class}{BCRANKsearch.Rdash.class}} object
\end{Description}
\begin{Section}{Objects from the Class}
Objects are not intended to be created directly but as a result from
running \code{\LinkA{bcrank}{bcrank}}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{consensus}:] consensus sequence in IUPAC coding
\item[\code{bcrankScore}:] bcrank  score for the consensus
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[consensus] \code{signature(object = "BCRANKmatch")}: Returns
the consensus sequence.
\item[bcrankScore] \code{signature(object = "BCRANKmatch")}: Returns
the bcrank score.
\item[matchVector] \code{signature(object = "BCRANKmatch")}: Returns
a vector with 0's (no match) and 1's (match) of same length and
order as the ranked DNA sequences.
}
\end{Section}
\begin{Author}\relax
Adam Ameur, \email{adam.ameur@lcb.uu.se}
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{bcrank}{bcrank}},
\code{\LinkA{BCRANKsearch-class}{BCRANKsearch.Rdash.class}}
\end{SeeAlso}

