BCRANKmatch-class           package:BCRANK           R Documentation

_C_l_a_s_s "_B_C_R_A_N_K_m_a_t_c_h"

_D_e_s_c_r_i_p_t_i_o_n:

     Holds the 'bcrank' score for one IUPAC consensus sequence. Several
     objects of this class are collected in a 'BCRANKsearch-class'
     object

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are not intended to be created directly but as a result
     from running 'bcrank'.

_S_l_o_t_s:


     '_c_o_n_s_e_n_s_u_s': consensus sequence in IUPAC coding

     '_b_c_r_a_n_k_S_c_o_r_e': bcrank  score for the consensus

_M_e_t_h_o_d_s:


     _c_o_n_s_e_n_s_u_s 'signature(object = "BCRANKmatch")': Returns the
          consensus sequence.

     _b_c_r_a_n_k_S_c_o_r_e 'signature(object = "BCRANKmatch")': Returns the
          bcrank score.

     _m_a_t_c_h_V_e_c_t_o_r 'signature(object = "BCRANKmatch")': Returns a vector
          with 0's (no match) and 1's (match) of same length and order
          as the ranked DNA sequences.

_A_u_t_h_o_r(_s):

     Adam Ameur, adam.ameur@lcb.uu.se

_S_e_e _A_l_s_o:

     'bcrank', 'BCRANKsearch-class'

