\HeaderA{ProcesSet-class}{Class ProcesSet}{ProcesSet.Rdash.class}
\aliasA{boxplot,ProcesSet-method}{ProcesSet-class}{boxplot,ProcesSet.Rdash.method}
\aliasA{chipName,ProcesSet-method}{ProcesSet-class}{chipName,ProcesSet.Rdash.method}
\aliasA{chipType,ProcesSet-method}{ProcesSet-class}{chipType,ProcesSet.Rdash.method}
\aliasA{export,ProcesSet-method}{ProcesSet-class}{export,ProcesSet.Rdash.method}
\aliasA{getTreeData,ProcesSet-method}{ProcesSet-class}{getTreeData,ProcesSet.Rdash.method}
\aliasA{hist,ProcesSet-method}{ProcesSet-class}{hist,ProcesSet.Rdash.method}
\aliasA{mboxplot,ProcesSet-method}{ProcesSet-class}{mboxplot,ProcesSet.Rdash.method}
\aliasA{ProcesSet}{ProcesSet-class}{ProcesSet}
\aliasA{schemeFile}{ProcesSet-class}{schemeFile}
\aliasA{schemeFile,ProcesSet-method}{ProcesSet-class}{schemeFile,ProcesSet.Rdash.method}
\aliasA{schemeFile<\Rdash}{ProcesSet-class}{schemeFile<.Rdash.}
\aliasA{schemeFile<-,ProcesSet,character-method}{ProcesSet-class}{schemeFile<.Rdash.,ProcesSet,character.Rdash.method}
\aliasA{schemeSet}{ProcesSet-class}{schemeSet}
\aliasA{schemeSet,ProcesSet-method}{ProcesSet-class}{schemeSet,ProcesSet.Rdash.method}
\aliasA{schemeSet<\Rdash}{ProcesSet-class}{schemeSet<.Rdash.}
\aliasA{schemeSet<-,ProcesSet,SchemeTreeSet-method}{ProcesSet-class}{schemeSet<.Rdash.,ProcesSet,SchemeTreeSet.Rdash.method}
\aliasA{validData,ProcesSet-method}{ProcesSet-class}{validData,ProcesSet.Rdash.method}
\keyword{classes}{ProcesSet-class}
\begin{Description}\relax
This class provides access to class \code{\LinkA{SchemeTreeSet}{SchemeTreeSet}} for the derived 
classes \code{\LinkA{DataTreeSet}{DataTreeSet}}, \code{\LinkA{ExprTreeSet}{ExprTreeSet}} and \code{\LinkA{CallTreeSet}{CallTreeSet}}. 
It extends class \code{\LinkA{TreeSet}{TreeSet}}.
\end{Description}
\begin{Section}{Objects from the Class}
Usually, no objects are created from it.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{scheme}:] Object of class \code{"SchemeTreeSet"} providing access to 
\code{\LinkA{ROOT}{ROOT}} scheme file.
\item[\code{data}:] Object of class \code{"data.frame"}. The data.frame can contain 
the data stored in \code{\LinkA{ROOT}{ROOT}} data trees.
\item[\code{params}:] Object of class \code{"list"} representing relevant parameters.
\item[\code{setname}:] Object of class \code{"character"} representing the name to the
\code{\LinkA{ROOT}{ROOT}} file subdirectoy where the \code{\LinkA{ROOT}{ROOT}} trees are stored,
usually one of \sQuote{DataTreeSet}, \sQuote{PreprocesSet}, \sQuote{CallTreeSet}.
\item[\code{settype}:] Object of class \code{"character"} describing the type of treeset
stored in \code{setname}, usually one of \sQuote{rawdata}, \sQuote{preprocess}.
\item[\code{rootfile}:] Object of class \code{"character"} representing the name 
of the \code{\LinkA{ROOT}{ROOT}} file, including full path.
\item[\code{filedir}:] Object of class \code{"character"} describing the full path to
the system directory where \code{rootfile} is stored.
\item[\code{numtrees}:] Object of class \code{"numeric"} representing the number of 
\code{\LinkA{ROOT}{ROOT}} trees stored in subdirectoy \code{setname}.
\item[\code{treenames}:] Object of class \code{"list"} representing the names of the 
\code{\LinkA{ROOT}{ROOT}} trees stored in subdirectoy \code{setname}.
}
\end{Section}
\begin{Section}{Extends}
Class \code{"\LinkA{TreeSet}{TreeSet.Rdash.class}"}, directly.
\end{Section}
\begin{Section}{Methods}
\describe{
\item[boxplot] \code{signature(x = "ProcesSet")}: creates a \code{\LinkA{boxplot}{boxplot}} of the
data from data.frame \code{data}.
\item[chipName] \code{signature(object = "ProcesSet")}: extracts slot \code{chipname} 
from slot \code{scheme}.
\item[chipType] \code{signature(object = "ProcesSet")}:  extracts slot \code{chiptype} 
from slot \code{scheme}.
\item[export] \code{signature(object = "ProcesSet")}: exports \code{\LinkA{ROOT}{ROOT}} trees 
as text file, see \code{\LinkA{export-methods}{export.Rdash.methods}}.
\item[getTreeData] \code{signature(object = "ProcesSet")}: exports tree data from \code{\LinkA{ROOT}{ROOT}} 
file \code{rootfile}, and saves as data.frame \code{data}.
\item[hist] \code{signature(x = "ProcesSet")}: creates a plot showing the histograms 
for data.frame \code{data}.
\item[mboxplot] \code{signature(x = "ProcesSet")}: creates an M-boxplot of the
data from data.frame \code{data}.
\item[schemeFile] \code{signature(object = "ProcesSet")}: extracts the \code{\LinkA{ROOT}{ROOT}}  
scheme file from slot \code{scheme}.
\item[schemeFile<-] \code{signature(object = "ProcesSet"), value = "character")}: replaces the \code{\LinkA{ROOT}{ROOT}}  
scheme file from slot \code{scheme}.
\item[schemeSet] \code{signature(object = "ProcesSet")}: extracts slot \code{scheme}.
\item[schemeSet<-] \code{signature(object = "ProcesSet"), value = "SchemeTreeSet")}: replaces slot \code{scheme} 
with a different \code{SchemeTreeSet}.
\item[validData] \code{signature(object = "ProcesSet")}: extracts a subset of columns 
from data.frame \code{data}.
}
\end{Section}
\begin{Author}\relax
Christian Stratowa
\end{Author}
\begin{SeeAlso}\relax
derived classes \code{\LinkA{DataTreeSet}{DataTreeSet.Rdash.class}}, \code{\LinkA{ExprTreeSet}{ExprTreeSet.Rdash.class}}, 
\code{\LinkA{CallTreeSet}{CallTreeSet.Rdash.class}}.
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
showClass("ProcesSet")
\end{ExampleCode}
\end{Examples}

