output                  package:XDE                  R Documentation

_O_p_t_i_o_n_s _f_o_r _s_t_o_r_i_n_g _r_e_s_u_l_t_s _o_f _t_h_e _M_C_M_C _c_h_a_i_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     A numeric vector indicating which chains to write to file and, for
     those parameters that are written to file, how often the chains
     should be written to file.

_U_s_a_g_e:

     output(object)

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'XdeParameter' or 'XdeMcmc' 

_D_e_t_a_i_l_s:

     Replacement methods are only available for objects of class
     'XdeParameter'.  Accessor methods are available for objects of
     class 'XdeParameter' and 'XdeMcmc'.

_V_a_l_u_e:

     A named numerical vector.  The first element (thin) specifies how
     often to write chains to file.  For instance, if output[1]=2 the
     chains will be written to file every other iteration.  Elements 2
     - 22 of the vector are indicators for whether to write the write
     the chains of the Bayesian parameters to file.

_N_o_t_e:

     Parameters indexed by gene and study (Delta, Phi, Nu, and sigma2)
     grow very large quickly.

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     'burnin', 'XdeParameter-class', 'XdeMcmc-class'

_E_x_a_m_p_l_e_s:

     data(xmcmc)
     output(xmcmc)

