\HeaderA{pairs-methods}{pairs function for high-throughput data}{pairs.Rdash.methods}
\aliasA{pairs,data.frame-method}{pairs-methods}{pairs,data.frame.Rdash.method}
\aliasA{pairs,matrix-method}{pairs-methods}{pairs,matrix.Rdash.method}
\keyword{methods}{pairs-methods}
\keyword{hplot}{pairs-methods}
\begin{Description}\relax
A convenient wrapper for pairs that uses smoothScatter to plot the
density of the points and displays the spearman correlation
coefficient of the pairwise scatterplots.
\end{Description}
\begin{Section}{Methods}
\describe{

\item[x = "matrix"] Typically a matrix of effect size estimates
obtained in each study.  Rows are genes, columns are studies.

\item[x = "data.frame"] Typically a \code{data.frame} of effect size
estimates obtained in each study.  Rows are genes, columns are studies.
}
\end{Section}

