burnin                  package:XDE                  R Documentation

_I_n_d_i_c_a_t_o_r _f_o_r _r_u_n_n_i_n_g _a _M_C_M_C _b_u_r_n_i_n

_D_e_s_c_r_i_p_t_i_o_n:

     When 'TRUE', log files from MCMC chains are not written to file.
     When 'FALSE', log files are written for every parameter by
     default.

_U_s_a_g_e:

     burnin(object)

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'XdeParameter' 

_V_a_l_u_e:

     logical

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     'XdeParameter-class'

_E_x_a_m_p_l_e_s:

     data(expressionSetList)
     params <- new("XdeParameter", phenotypeLabel="adenoVsquamous",
                   esetList=expressionSetList)

     ##the replacement method for burnin is called for its side effect of
     ##providing default values of storing MCMC chains
     output(params)[2:22]
     burnin(params) <- FALSE
     output(params)[2:22]
     burnin(params) <- TRUE
     output(params)[2:22]

