xmcmc                  package:XDE                  R Documentation

_O_b_j_e_c_t _o_f _c_l_a_s_s _X_d_e_M_c_m_c

_D_e_s_c_r_i_p_t_i_o_n:

     An object of class XdeMcmc is created by fitting the Bayesian
     hierarchical model to the 'expressionSetList' example data.

_U_s_a_g_e:

     data(xmcmc)

_D_e_t_a_i_l_s:

     The 'xmcmc' data example was obtained as described in the XDE
     vignette.

_E_x_a_m_p_l_e_s:

     data(xmcmc)
     xmcmc

     ##ordinarily, one should not need to change the directory in an object
     ##of class XdeMcmc -- therefore, a replacment method is not defined
     pathToLogFiles <- system.file("logFiles", package="XDE")
     xmcmc@directory <- pathToLogFiles

     ##The $ operator can be used to extract chains. For instance, here we
     ##extract the c2 chain
     c2 <- xmcmc$c2
     if(require(coda)){
       plot(as.mcmc(c2))
     }

