calls.ICE             package:VanillaICE             R Documentation

_I_n_d_i_c_a_t_e_s _w_h_e_t_h_e_r _t_o _u_s_e _c_o_n_f_i_d_e_n_c_e _s_c_o_r_e_s _o_f _t_h_e _o_b_s_e_r_v_e_d _c_o_p_y
_n_u_m_b_e_r _e_s_t_i_m_a_t_e_s _i_n _t_h_e _H_M_M

_D_e_s_c_r_i_p_t_i_o_n:

     In the current framework, the confidence scores are assumed to be
     the inverse of the standard error

_U_s_a_g_e:

     calls.ICE(object)
     calls.ICE(object) <- value

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'HmmOptions'

   value: Logical.  If TRUE, confidence scores of the genotype calls
          are used to calculate emission probabilities

_V_a_l_u_e:

     Logical

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     See the VanillaICE vignette

