\HeaderA{calls.emission}{Calculates emission probabilities for the genotype calls}{calls.emission}
\keyword{methods}{calls.emission}
\begin{Description}\relax
Emission probabilites for the genotype calls
\end{Description}
\begin{Usage}
\begin{verbatim}
calls.emission(object)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] Object inheriting from class \code{HmmOptions}
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
If calls.ICE = TRUE in the \code{HmmOptions} object, then the
emission probabilities for the genotype calls take into account the
confidence scores for the called genotypes.
\end{Details}
\begin{Value}
Array of emission probabilities for the genotype calls (on the log
scale)
\end{Value}
\begin{Author}\relax
R. Scharpf
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{calls.ICE}{calls.ICE}}
\end{SeeAlso}

