copyNumber.emission        package:VanillaICE        R Documentation

_C_a_l_c_u_l_a_t_e _e_m_i_s_s_i_o_n _p_r_o_b_a_b_i_l_i_t_i_e_s _f_o_r _c_o_p_y _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Calculate emission probabilities for the copy number

_U_s_a_g_e:

     copyNumber.emission(object)

_A_r_g_u_m_e_n_t_s:

  object: Instance of class 'HmmOptions'

_D_e_t_a_i_l_s:

     If 'copyNumber.ICE' = TRUE in the 'HmmOptions' object, then the
     emission probabilities for the copy number estimates take into
     account the confidence scores stored in the cnConfidence slot of
     the object inherting from class 'SnpLevelSet'.  The confidence
     scores are assumed to be inverse standard errors.

_V_a_l_u_e:

     Array of emission probabilities for the copy number estimates (on
     the log scale)

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     'copyNumber.ICE'

