scaleTransitionProbability    package:VanillaICE    R Documentation

_S_c_a_l_e_s _t_h_e _p_r_o_b_a_b_i_l_i_t_y _o_f _t_r_a_n_s_i_t_i_o_n_i_n_g _b_e_t_w_e_e_n _t_w_o _s_t_a_t_e_s _i_n _t_h_e
_V_i_t_e_r_b_i _a_l_g_o_r_i_t_h_m

_D_e_s_c_r_i_p_t_i_o_n:

     Function only returns a matrix of 1's (by default, no scaling of
     the transition probabilities).  This may be changed in future
     releases.

_U_s_a_g_e:

     scaleTransitionProbability(states, SCALE = 2, normalLabel = "N")

_A_r_g_u_m_e_n_t_s:

  states: character string of hidden states

   SCALE: Numeric. See details.

normalLabel: Character: label used for the baseline state.

_V_a_l_u_e:

     A matrix of dimension S x S, where S is the number of states.  The
     diagonal should always be 1 (we do not scale the probability of
     remaining in the same state).  A slot for storing this matrix is
     provided in the 'HmmParameter' class.

_A_u_t_h_o_r(_s):

     RS

_S_e_e _A_l_s_o:

     'genomicDistance', 'transitionScale', 'HmmParameter-class'

