calls.emission          package:VanillaICE          R Documentation

_C_a_l_c_u_l_a_t_e_s _e_m_i_s_s_i_o_n _p_r_o_b_a_b_i_l_i_t_i_e_s _f_o_r _t_h_e _g_e_n_o_t_y_p_e _c_a_l_l_s

_D_e_s_c_r_i_p_t_i_o_n:

     Emission probabilites for the genotype calls

_U_s_a_g_e:

     calls.emission(object)

_A_r_g_u_m_e_n_t_s:

  object: Object inheriting from class 'HmmOptions'

_D_e_t_a_i_l_s:

     If calls.ICE = TRUE in the 'HmmOptions' object, then the emission
     probabilities for the genotype calls take into account the
     confidence scores for the called genotypes.

_V_a_l_u_e:

     Array of emission probabilities for the genotype calls (on the log
     scale)

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     'calls.ICE'

