parseComplex             package:RpsiXML             R Documentation

_P_a_r_s_e _c_o_m_p_l_e_x, _i_n_t_e_r_a_c_t_o_r _a_n_d _e_x_p_e_r_i_m_e_n_t _f_r_o_m _P_S_I-_M_I _2._5 _X_M_L _n_o_d_e

_D_e_s_c_r_i_p_t_i_o_n:

     Wrappers of internal functions (".parsePsimi25Complex",
     ".parsePsimi25Interactor", ".parsePsimi25Experiment") to parse
     nodes from PSI-MI 2.5 XML node. By default these parsers is used
     in objects of 'psimi25Source-class' without any modification.
     Though they can be overwritten in these objects in special cases,
     it is not advisory to do so due to the compatibility.

_U_s_a_g_e:

     parseComplex(x, ...)
     parseInteractor(x, ...)
     parseExperiment(x, ...)

_A_r_g_u_m_e_n_t_s:

       x: An object of the 'psimi25Source-class' 

     ...: Parameters passed to internal functions

_V_a_l_u_e:

     Object of 'psimi25Complex-class, \code{psimi25Interactor-class} or
     \code{psimi25Experiment-class} '

_N_o_t_e:

     An newly initialized instance of 'psimi25Source-class' contains
     the default form of these functions. Though they are allowd to be
     overwritten, it is not advisory to do so since this means the file
     to parse is not fully compatible with PSI-MI 2.5 standard. It is
     more sensible to contact the data provider before modifying or
     overwritting these functions.

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang
     <tchiang@ebi.ac.uk>

