translateID-methods         package:RpsiXML         R Documentation

_T_r_a_n_s_l_a_t_e _i_n_t_e_r_a_c_t_o_r_s _i_n_t_o _o_t_h_e_r _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     The method finds any annotation IDs of of 'psimi25Graph-class' or
     'psimi25Hypergraph-class' or 'psimi25Interactor-class'

_M_e_t_h_o_d_s:



     _r = "_p_s_i_m_i_2_5_G_r_a_p_h" An object of 'psimi25Graph-class'. It replaces
          the nodes with translated IDs and returns a new psimi25Graph
          object back.

     _r = "_p_s_i_m_i_2_5_H_y_p_e_r_g_r_a_p_h" An object of 'psimi25Hypergraph-class'.
          Since the nodes of psimi25Hypergraph are not mutable, this
          method accepts a UniProt ID of interactors and returns the
          translated ID back. NA is also acceptable, which can be used
          to check interactors without mapping to UniProt

     _r = "_l_i_s_t"  A list of 'psimi25Interactor-class', returns a vector
          of translated identifiers back

     _r = "_p_s_i_m_i_2_5_I_n_t_e_r_a_c_t_o_r" An object of 'psimi25Interactor-class',
          returns translated identifier. Before using the method it is
          advisable to used xref(x) method to check which cross
          references are provided.

