\HeaderA{psimi25Hypergraph-class}{Class "psimi25Hypergraph"}{psimi25Hypergraph.Rdash.class}
\aliasA{initialize,psimi25Hypergraph-method}{psimi25Hypergraph-class}{initialize,psimi25Hypergraph.Rdash.method}
\aliasA{show,psimi25Hypergraph-method}{psimi25Hypergraph-class}{show,psimi25Hypergraph.Rdash.method}
\keyword{classes}{psimi25Hypergraph-class}
\begin{Description}\relax
Class to present PSI-MI 2.5 XML data as hypergraph.
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{psimi25XML2Graph}
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{interactors}:] Object of class \code{"matrix"}, Object of class \code{"matrix"},
interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation. 
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are 
the nodes of the psimi25Graph is given.
}
\end{Section}
\begin{Section}{Extends}
Class \code{Hypergraph}, directly.
\end{Section}
\begin{Section}{Methods}
\describe{
\item[initialize] \code{signature(.Object = "psimi25Hypergraph")} 
\item[show] \code{signature(object = "psimi25Hypergraph")}: show method 
\item[translateSourceID] \code{signature(r = "psimi25Hypergraph")}:
translate source ID into other IDs 
}
\end{Section}
\begin{Author}\relax
Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{psimi25XML2Graph}{psimi25XML2Graph}},\code{S4class\LinkA{psimi25Graph-class}{psimi25Graph.Rdash.class}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
showClass("psimi25Hypergraph")
\end{ExampleCode}
\end{Examples}

