complexName             package:RpsiXML             R Documentation

_A_c_c_e_s_s_o_r _f_u_n_c_t_i_o_n_s _f_o_r _c_o_m_p_l_e_x

_D_e_s_c_r_i_p_t_i_o_n:

     These functions are used to extract useful information of complex
     in the form of 'psimi25Complex-class' object.

_U_s_a_g_e:

     complexName(x)
     complexMembers(x)
     complexAttributes(x)

_A_r_g_u_m_e_n_t_s:

       x: An object of 'psimi25Complex-class' 

_D_e_t_a_i_l_s:

     See examples

_V_a_l_u_e:

complexName: Returns the name of the complex in characters

complexMembers: A data frame of protein members building the complex
          and their information

complexAttributes: A named vector of character strings, the names are
          the attribute names while the values are attributes
          documented in the PSI-MI 2.5 file

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang
     <tchiang@ebi.ac.uk>

_S_e_e _A_l_s_o:

     'psimi25Complex-class'

_E_x_a_m_p_l_e_s:

     xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

     intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
     intactComplexSet <- parsePsimi25Complex(intactComplexxml, INTACT.PSIMI25)
     complexSample <- complexes(intactComplexSet)[[2]]

     complexName(complexSample)
     complexAttributes(complexSample)
     complexMembers(complexSample)

