psimi25Interaction-class {RpsiXML} | R Documentation

## Class "psimi25Interaction"

### Description

A class representing interaction data

### Objects from the Class

Objects can be created by calls of the form `parsePsimi25Interaction`

### Slots

`sourceDb`:
  Object of class `"character"`, source database
`sourceId`:
  Object of class `"character"`, source database ID
`interactionType`:
  Object of class `"character"`, character, the method used for detecting the interaction ,such as "pull down"
`expPubMed`:
  Object of class `"character"`, PubMed ID of the publication that describes the experiment
`expSourceId`:
  Object of class `"character"`, source database ID of the experiment
`confidenceValue`:
  Object of class `"character"`, confidence value of the experimental interaction
`participant`:
  Object of class `"character"`, UniProt IDs of the participants. Important when no bait/prey information is available
`bait`:
  Object of class `"character"`, UniProt ID of the bait
`prey`:
  Object of class `"character"`, UniProt ID(s) of the prey(s)
`inhibitor`:
  Object of class `"character"`, UniProt ID of the inhibitor, NA when missing
`neutralComponent`:
  Object of class `"character"`, UniProt ID of the neutral components, NA when missing

### Methods

interactionType
  `signature(x = "psimi25Interaction")`: finds out interaction type
show
  `signature(object = "psimi25Interaction")`: a print method
sourceDb
  `signature(x = "psimi25Interaction")`: finds out source database
sourceId
  `signature(x = "psimi25Interaction")`: returns ID of the source database
bait
  `signature(x = "psimi25Interaction")`: returns the UniProt ID of the bait
prey
  `signature(x = "psimi25Interaction")`: returns the UniProt ID(s) of the prey(s)

### Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>

### See Also

`parsePsimi25Interaction`,`S4CLASSpsimi25Interactor-class`, `S4CLASSpsimi25Experiment-class`, `S4classpsimi25InteractionEntry-class`

### Examples

    showClass("psimi25Interaction")

[Package RpsiXML version 1.0.0 Index]