complexes              package:RpsiXML              R Documentation

_E_x_t_r_a_c_t _c_o_m_p_l_e_x_e_s _f_r_o_m _p_s_i_m_i_2_5_C_o_m_p_l_e_x_E_n_t_r_y

_D_e_s_c_r_i_p_t_i_o_n:

     Extract complexes from an object of 'psimi25ComplexEntry-class'

_U_s_a_g_e:

     complexes(x)

_A_r_g_u_m_e_n_t_s:

       x: An object of 'psimi25ComplexEntry-class' 

_V_a_l_u_e:

     A list of 'psimi25Complex'

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang
     <tchiang@ebi.ac.uk>

_R_e_f_e_r_e_n_c_e_s:

     PSI-MI 2.5 XML data exchange format <URL:
     http://www.psidev.info/index.php?q=node/60>

_S_e_e _A_l_s_o:

     'psimi25Complex-class'

_E_x_a_m_p_l_e_s:

     ## Not run:
     xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

     intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
     intactComplexSet <- parsePsimi25Complex(intactComplexxml,
     INTACT.PSIMI25)

     complexes(intactComplexSet)
     ## End(Not run)

