psimi25Hypergraph-class       package:RpsiXML       R Documentation

_C_l_a_s_s "_p_s_i_m_i_2_5_H_y_p_e_r_g_r_a_p_h"

_D_e_s_c_r_i_p_t_i_o_n:

     Class to present PSI-MI 2.5 XML data as hypergraph.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'psimi25XML2Graph'

_S_l_o_t_s:


     '_i_n_t_e_r_a_c_t_o_r_s': Object of class '"matrix"', Object of class
          '"matrix"', interactor information in a matrix, Each row
          represents one interactor. Source IDs are used as row names.
          Each column represents one annotation.  Annotations include:
          UniProt ID, short label, organism name, and NCBI taxonomy ID.
          Only those interactors which are  the nodes of the
          psimi25Graph is given.

_E_x_t_e_n_d_s:

     Class 'Hypergraph', directly.

_M_e_t_h_o_d_s:


     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "psimi25Hypergraph")' 

     _s_h_o_w 'signature(object = "psimi25Hypergraph")': show method 

     _t_r_a_n_s_l_a_t_e_S_o_u_r_c_e_I_D 'signature(r = "psimi25Hypergraph")': translate
          source ID into other IDs 

_A_u_t_h_o_r(_s):

     Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang
     <j.zhang@dkfz.de>

_S_e_e _A_l_s_o:

     'psimi25XML2Graph','S4classpsimi25Graph-class'

_E_x_a_m_p_l_e_s:

     showClass("psimi25Hypergraph")

