interactorInfo            package:RpsiXML            R Documentation

_I_n_t_e_r_a_c_t_o_r _i_n_f_o _i_n _a _m_a_t_r_i_x

_D_e_s_c_r_i_p_t_i_o_n:

     The function returns the essential information of interactors in a
     matrix. Xrefs are left out since they have arbitrary numbers of
     annotation and cannot be summarized into a matrix.

_U_s_a_g_e:

     interactorInfo(x)

_A_r_g_u_m_e_n_t_s:

       x: An object which contains psimi25Interactor information, for
          example objects of 'psimi25InteractionEntry-class',
          'psimi25Graph-class', 'psimi25Hypergraph-class' or
          'psimi25ComplexEntry-class' 

     .

_V_a_l_u_e:

     A matrix of interactor information, each row represents an
     interactor The columns are 

sourceDb : source database

sourceId : source database index

shortLabel: short label assigned by the source database

uniprotId: UniProt ID, NA if not available

organismName: the organism of the interactor protein

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>

_S_e_e _A_l_s_o:

     'xref', 'availableXrefs'

_E_x_a_m_p_l_e_s:

     xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

     hprdxml <- file.path(xmlDir, "hprd_200709_test.xml")
     hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

     hprdInteractorInfo <- interactorInfo(hprdSet)

