\HeaderA{complexes}{Extract complexes from psimi25ComplexEntry}{complexes}
\keyword{models}{complexes}
\begin{Description}\relax
Extract complexes from an object of \code{\LinkA{psimi25ComplexEntry-class}{psimi25ComplexEntry.Rdash.class}}
\end{Description}
\begin{Usage}
\begin{verbatim}
complexes(x)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{x}] An object of \code{\LinkA{psimi25ComplexEntry-class}{psimi25ComplexEntry.Rdash.class}} 
\end{ldescription}
\end{Arguments}
\begin{Value}
A list of \code{psimi25Complex}
\end{Value}
\begin{Author}\relax
Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang <tchiang@ebi.ac.uk>
\end{Author}
\begin{References}\relax
PSI-MI 2.5 XML data exchange format \url{http://www.psidev.info/index.php?q=node/60}
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{psimi25Complex-class}{psimi25Complex.Rdash.class}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Not run:
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
intactComplexSet <- parsePsimi25Complex(intactComplexxml,
INTACT.PSIMI25)

complexes(intactComplexSet)
## End(Not run)
\end{ExampleCode}
\end{Examples}

