bait                 package:RpsiXML                 R Documentation

_E_x_t_r_a_c_t _b_a_i_t, _p_r_e_y, _p_a_r_t_i_c_i_p_a_n_t, _i_n_h_i_b_i_t_o_r, _p_u_b_m_e_d, _c_o_n_f_i_d_e_n_c_e _v_a_l_u_e, _i_n_t_e_r_a_c_t_i_o_n _t_y_p_e, 
_o_r _n_e_u_t_r_a_l _c_o_m_p_o_n_e_n_t _i_n_f_o_r_m_a_t_i_o_n _f_r_o_m _a_n _o_b_j_e_c_t _o_f _p_s_i_m_i_2_5_I_n_t_e_r_a_c_t_i_o_n-_c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     The functions return bait/prey UniProt identifier of the given
     'psimi25Interaction' object.

_U_s_a_g_e:

     bait(x)
     prey(x)
     participant(x)
     inhibitor(x)
     pubmedID(x)
     confidenceValue(x)
     neutralComponent(x)

_A_r_g_u_m_e_n_t_s:

       x: An object of 'psimi25Interaction-class', see example 

_V_a_l_u_e:

     The source database identifier is returned.

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang
     <tchiang@ebi.ac.uk>

_R_e_f_e_r_e_n_c_e_s:

     The UniProt database <URL: http://www.expasy.uniprot.org/>

_S_e_e _A_l_s_o:

     'psimi25Interaction-class'

_E_x_a_m_p_l_e_s:

     xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

     gridxml <- file.path(xmlDir, "biogrid_200804_test.xml")
     gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)

     interExp <- interactions(gridSet)[[1]]
     bait(interExp)
     prey(interExp)

