reporter               package:Biobase               R Documentation

_E_x_a_m_p_l_e _d_a_t_a._f_r_a_m_e _r_e_p_r_e_s_e_n_t_i_n_g _r_e_p_o_r_t_e_r _i_n_f_o_r_m_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     The 'reporter' object is a 500 by 1 data frame. The rows represent
     the 500 probe ids in the 'geneData' data. The values in 'reporter'
     are the predefined probe types for the probes. 'reporter' is used
     in conjunction with the 'geneData' object and its associates.

_U_s_a_g_e:

     data(reporter)

_F_o_r_m_a_t:

     A 500 by 1 data frame

_D_e_t_a_i_l_s:

     There are 10 predefined probe types:

'_A_F_F_X-' Quality Control (QC)

'__f_' SequenceFamily

'__g_' CommonGroups

'__s_' SimilarityConstraint

'__r_' RulesDropped

'__i_' Incomplete

'__b_' AmbiguousProbeSet

'__l_' LongProbeSet

'__a_t' AntiSenseTarget

'__s_t' SenseTarget

_S_o_u_r_c_e:

     Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals
     (<URL:
     http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf>)

_E_x_a_m_p_l_e_s:

     data(reporter)
     ## maybe str(reporter) ; plot(reporter) ...

