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Suggests: marray, EMV, limma, Mfuzz Package: maanova Version: 1.8.1 Depends: R (>= 2.5.0) Suggests: qvalue, snow Package: macat Version: 1.12.0 Depends: Biobase, annotate Suggests: hgu95av2, stjudem Package: made4 Version: 1.12.1 Depends: ade4 Suggests: affy,RColorBrewer, gplots,scatterplot3d Package: maigesPack Version: 1.2.1 Depends: R (>= 2.0.0), convert, graph, limma, marray, methods Suggests: amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML, rgl, som Package: makePlatformDesign Version: 1.2.0 Depends: R (>= 2.6.0), affyio, oligo Package: makecdfenv Version: 1.16.0 Depends: R (>= 2.6.0), methods, Biobase (>= 1.4.1), affy (>= 1.4.0), utils, affyio Package: marray Version: 1.16.0 Depends: R (>= 1.9.0), limma, methods Suggests: tkWidgets Package: matchprobes Version: 1.10.0 Depends: R (>= 2.6.0), Biobase, affy Suggests: hgu95av2cdf, hgu95av2probe, hu6800cdf, hu6800probe Package: metaArray Version: 1.12.0 Depends: MergeMaid Package: multtest Version: 1.18.0 Depends: R (>= 2.1.0), methods, Biobase, survival Package: nem Version: 2.2.1 Depends: R (>= 2.0), e1071 (>= 1.5), graph (>= 1.10), Rgraphviz (>= 1.10), RBGL (>= 1.8.1), time (>= 1.0) Suggests: Biobase (>= 1.10) Package: nnNorm Version: 2.2.0 Depends: R(>= 2.2.0), nnet, marray Package: oligoClasses Version: 1.0.3 Depends: R (>= 2.6.0), Biobase Package: oligo Version: 1.2.2 Depends: methods, R (>= 2.5.0), Biobase (>= 1.13.58), splines, RSQLite, preprocessCore, AnnotationDbi, affxparser, oligoClasses (>= 0.99.4) Suggests: hapmap100kxba, pd.mapping50k.xba240 Package: oneChannelGUI Version: 1.4.5 Depends: Biobase, affylmGUI, tkWidgets Suggests: annotate, GOstats, genefilter, maSigPro, pamr, pdmclass, Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd, humanLLMappings, mouseLLMappings, ratLLMappings, metaArray Package: ontoTools Version: 1.14.0 Depends: R (>= 2.4.0), methods, graph, SparseM, GO, Biobase, annotate Suggests: combinat, Iyer517, humanLLMappings Package: pamr Version: 1.36.0 Depends: cluster, survival Package: panp Version: 1.8.0 Depends: affy (>= 1.14.0), R (>= 2.5.0), Biobase (>= 1.14.0) Package: pathRender Version: 1.6.1 Depends: graph, Rgraphviz, cMAP Package: pcaMethods Version: 1.14.0 Depends: MASS, pls, methods Suggests: aroma.light Package: pcot2 Version: 1.6.0 Depends: R (>= 2.0.0), grDevices, Biobase, amap Suggests: multtest, hu6800, KEGG, mvtnorm Package: pdInfoBuilder Version: 1.2.0 Depends: R (>= 2.6.0), methods, Biobase (>= 1.13.58), RSQLite (>= 0.4-15), affxparser (>= 1.7.2), oligo (>= 0.99.97) Imports: Biobase (>= 1.13.58) Package: pdmclass Version: 1.10.0 Depends: Biobase (>= 1.4.22), R (>= 1.9.0), fibroEset, mda Package: pgUtils Version: 1.10.0 Depends: R (>= 1.8.0), Rdbi (>= 1.0.2), RdbiPgSQL (>= 1.0.2), methods Package: pickgene Version: 1.10.0 Depends: MASS Package: pkgDepTools Version: 1.4.1 Depends: methods, graph, RBGL Imports: graph, RBGL Suggests: Biobase, Rgraphviz, RCurl Package: plgem Version: 1.10.1 Depends: R (>= 2.6.0), Biobase, MASS Package: plier Version: 1.8.0 Depends: R (>= 2.0), affy, methods Package: ppiStats Version: 1.4.1 Depends: GO, GOstats, YEAST, graph, Category, ppiData (>= 0.1.6) Suggests: yeastExpData, geneplotter, lattice, grid, xtable, Biobase, RColorBrewer Package: prada Version: 1.14.0 Depends: R (>= 2.1.0), Biobase, RColorBrewer, grid, methods, rrcov Imports: MASS, KernSmooth, RColorBrewer, geneplotter Suggests: cellHTS, rflowcyt, tcltk Package: preprocessCore Version: 1.0.0 Depends: methods Package: puma Version: 1.4.3 Depends: R (>= 2.6.0), Biobase, affy, limma, annotate, ROCR Suggests: pumadata, snow Package: quantsmooth Version: 1.4.0 Depends: quantreg, lodplot Package: qvalue Version: 1.12.0 Depends: tcltk Package: rHVDM Version: 1.4.0 Depends: R (>= 2.3), R2HTML (>= 1.5), affy (>= 1.5), minpack.lm (>= 1.0), Biobase Package: rama Version: 1.10.0 Package: rbsurv Version: 1.4.0 Depends: R (>= 2.4.0), Biobase, survival Package: reb Version: 1.12.0 Depends: R (>= 2.0), Biobase, idiogram (>= 1.5.3) Package: rflowcyt Version: 1.10.1 Depends: R (>= 2.3.0), survival, xtable, stats, KernSmooth, MASS, grid, methods, hexbin, rfcdmin (>= 0.9.0), fields, lattice, locfit, splancs, prada, xgobi Imports: graphics Package: rsbml Version: 1.4.0 Depends: R (>= 2.6.0), graph, methods, utils Package: safe Version: 1.10.0 Depends: R (>= 2.0.0), methods, Biobase Suggests: multtest, hu6800 Package: sagenhaft Version: 1.8.0 Depends: R (>= 2.5), SparseM (>= 0.73) Package: seqLogo Version: 1.4.0 Depends: methods, grid Package: sigPathway Version: 1.6.0 Depends: R (>= 2.0.0) Suggests: hgu133a (>= 1.10.0), XML (>= 1.6-3) Package: siggenes Version: 1.12.0 Depends: methods, multtest, Biobase, splines Suggests: affy, annotate, genefilter, KernSmooth Package: simpleaffy Version: 2.14.05 Depends: R (>= 2.0.0), affy, genefilter, Biobase, methods, utils, gcrma Imports: methods, utils Package: simulatorAPMS Version: 1.10.0 Depends: graph, apComplex, Rgraphviz, ScISI, ppiStats Package: sizepower Version: 1.8.0 Depends: stats Package: snapCGH Version: 1.6.0 Depends: limma, tilingArray, DNAcopy, GLAD, cluster, methods, aCGH Package: spikeLI Version: 1.6.0 Depends: utils Package: splicegear Version: 1.10.0 Depends: R (>= 2.6.0), methods, utils, grid, Biobase(>= 1.15), XML (>= 0.92-2), annotate Package: splots Version: 1.4.0 Depends: R (>= 2.3.0), grid Package: spotSegmentation Version: 1.12.0 Depends: R (>= 1.7.0), mclust Package: sscore Version: 1.10.0 Depends: R (>= 1.8.0), affy Package: ssize Version: 1.10.0 Depends: gdata, xtable Package: stepNorm Version: 1.10.0 Depends: R (>= 1.8.0), marray, MASS, methods Package: tilingArray Version: 1.16.0 Depends: R (>= 2.6.0), methods, Biobase (>= 1.15.27), affy (>= 1.15.7), RColorBrewer (>= 0.2-3), grid (>= 2.0.0), strucchange (>= 1.3-0), vsn (>= 3.0.11), genefilter (>= 1.15.10), geneplotter (>= 1.15.7), pixmap (>= 0.4-4) Package: timecourse Version: 1.10.0 Depends: R (>= 2.1.1), limma (>= 1.8.6), MASS, Biobase, methods Package: tkWidgets Version: 1.16.0 Depends: R (>= 2.0.0), methods, widgetTools (>= 1.1.7), DynDoc (>= 1.3.0), tools Suggests: Biobase Package: topGO Version: 1.4.0 Depends: R (>= 2.6.0), methods, graph (>= 1.14.0), Biobase (>= 1.14.0), GO (>= 1.14.0), AnnotationDbi (>= 0.1.14), SparseM (>= 0.73) Imports: methods, graph (>= 1.14.0), Biobase (>= 1.14.0), SparseM (>= 0.73), AnnotationDbi (>= 0.1.14) Suggests: ALL, hgu95av2, genefilter, xtable, multtest, Rgraphviz, hgu133a Package: twilight Version: 1.14.1 Depends: R (>= 2.1.0), splines (>= 2.2.0), stats (>= 2.2.0),Biobase(>= 1.12.0) Suggests: golubEsets (>= 1.4.2), vsn (>= 1.7.2) Package: vbmp Version: 1.6.0 Depends: R (>= 2.5) Suggests: Biobase Package: vsn Version: 3.2.1 Depends: R (>= 2.6.0), methods, Biobase (>= 1.15.33), affy (>= 1.15.7), limma (>= 2.11.12) Suggests: affydata, hgu95av2cdf, geneplotter Package: weaver Version: 1.4.0 Depends: R (>= 2.5.0), digest, tools, utils, codetools Suggests: codetools Package: webbioc Version: 1.10.0 Depends: R (>= 1.8.0), Biobase, affy, multtest, annaffy, vsn, gcrma, qvalue Package: widgetInvoke Version: 1.10.0 Depends: methods, XML, RGtk Package: widgetTools Version: 1.14.0 Depends: R (>= 2.4.0), methods, utils, tcltk Suggests: Biobase Package: xcms Version: 1.10.7 Depends: R (>= 1.9.0), methods Suggests: faahKO, multtest, rgl, MassSpecWavelet (>= 1.3.1)