Package: GeneticsBase
Title: Classes and functions for handling genetic data
Version: 1.2.0
Date: 2007-04-24
Author: Gregory Warnes <warnes@bst.rochester.edu>
  Ross Lazarus <ross.lazarus@channing.harvard.edu>
  Scott D Chasalow <scott.chasalow@bms.com>
  Giovanni Montana <giovanni.montana@bms.com>
  Michael O'Connell <moconnell@insightful.com>
  Junsheng Cheng <jcheng8@users.sourceforge.net>
  Nitin Jain <nitin.jain@pfizer.com>
Maintainer: Gregory Warnes <warnes@bst.rochester.edu>
Depends: R (>= 2.3.1), methods, combinat, xtable, mvtnorm, haplo.stats
Imports: gdata (>= 2.3.0), gplots (>= 2.3.1), gtools (>= 2.2.3), 
  MASS
Description: 
  The R Genetics Project is a collaborative effort to develop a
  complete set of tools for storing, accessing, manipulating, and
  analyzing genetics data, from small candidate-gene studies
  consisting of a few genetic markers to large whole-genome studies
  containing hundreds of thousands of markers.  This package
  (GeneticsBase) provides a foundation of efficient data structures
  and easy-to-use manipulation functions.  
biocViews: Genetics
License: LGPL 
LazyLoad: true
ZipData: No
Collate: First.lib.R 
  LD-class.R LDband-class.R LDdist-class.R diseq-class.R
  geneSet-class.R
  geneSet-methods.R HWE.geneSet.R LD.R LDband.R LDdist.R alleleCount.R
  alleleFreq.R carrier.R diseq.inner.R dominant.R extractAlleles.R
  factor.geneSet.R genotypeLevels.R heterozygote.R homozygote.R
  missingCodes.geneSet.R plot.LD.R recessive.R showGeneSet.R
  subset.geneSet.R transTables.geneSet.R
  html.R print.LD.R
  HWE.chisq.R HWE.exact.R Armitage.R LDView.R PGtables.R alleleSummary.R assert.R
  binsearch.R ci.balance.R convert.R decodeCallCodes.R desMarkers.R
  diseq.ci.R diseq.table.R fastGrid.R founderGeneSet.R geneflag.R
  genotypeSummary.R getLD.R gregorius.R haplo.stats.wrapers.R 
  makeCCodesAndTables.R makeMarkerInfo.R makeTransTable.R
  makeTransTableList.R markerSummary.R onLoad.R ped2geneSet.R
  geneSet2Ped.R
  read.pfizer.Listing.R read.pfizer.Pivot.R read.phe.R
  readGenes.Pfizer.R readGenes.R readGenes.ped.R readGenes.perlegen.R
  writeSummary.R
Packaged: Wed Oct  3 14:46:44 2007; biocbuild
