SpliceExprSet-class {splicegear}R Documentation

Class "SpliceExprSet"

Description

A class to store probe expression values with alternative splicing information

Objects from the Class

Objects can be created by calls of the form new("SpliceExprSet", ...).

Slots

spliceSites:
Object of class "SpliceSites". The probes and splice site information.
probes:
Object of class "Probes". The matching expression values.
eset:
Object of class "exprSet". The matching expression values.

Methods

grid.plot
signature(x = "SpliceExprSet", y = "missing"): ...
plot
signature(x = "SpliceExprSet", y = "missing"): a ploting method.
show
signature(object = "SpliceExprSet"): a printing method.
spliceSites
signature(object = "SpliceExprSet"): accessor.

Author(s)

laurent@cbs.dtu.dk

References

a manuscript in preparation

See Also

as.data.frame.SpliceExprSet, sort.SpliceExprSet and SpliceSites-class

Examples

data(eset, package="splicegear")
data(probes, package="splicegear")
data(spsites, package="splicegear")

spliceset <- new("SpliceExprSet", eset=eset,
                       probes=probes, spliceSites=spsites)

plot(spliceset)

[Package splicegear version 1.0.10 Index]