limmaExample {ideogram}R Documentation

data included for ideogram vignette

Description

This data is included for use in the ideogram vignette.

Usage

data(limmaExample)

Details

"t" was created with the topTable function.

"vai.chr" is a chromLocation object that was created with the buildChromLocation function.

Source

The data was used with permission and published in Haematologica. 2004 Sep;89(9):1072-81.

Examples


data(limmaExample)
data <- t$M
names(data) <- rownames(t)
colors <- rep("gray",length(data))
colors[which(data>1)] <- "red"
colors[which(data<(-1))] <- "blue"
names(colors) <- names(data)

mideogram(data,vai.chr,xlim=c(-5,5),col=colors,pch=20)


[Package ideogram version 1.0.1 Index]