hu6800LOCUSID {hu6800}R Documentation

Map between Manufacturer Identifiers and Entrez Gene

Description

hu6800LOCUSID is an R environment that provides mappings between manufacturer ids and Entrez Gene ids.

Details

Each manufacturer id is mapped to a vector of Entrez Gene ids. An NA is assigned to those manufacturer ids that can not be mapped to an Entrez Gene id at this time.

If a given manufacturer id can be mapped to different Entrez Gene ids from various sources, we attempt to select the common ids. If a concensus cannot be determined, we select the smallest id.

Mappings were based on data provided by:

Entrez Gene:http://gopher5/compbio/annotationSourceData/ftp.ncbi.nlm.nih.gov/gene/DATA/. Built: Source data downloaded from Entrez Gene on Tue May 17 14:04:04 2005

Package built: Tue May 17 14:10:56 2005

References

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

Examples

    # Convert the environment to a list
    xx <- as.list(hu6800LOCUSID)
    # Remove probe ids that do not map to any LOCUSID
    xx <- xx[!is.na(xx)]
    if(length(xx) > 0){
        # The LOCUSIDs for the first two elements of XX
        xx[1:2]
        # Get the first one
        xx[[1]]
    }

[Package hu6800 version 1.8.4 Index]