clusterAnnotation-class {goCluster}R Documentation

Class "clusterAnnotation", an abstract class that represents functions for annotating microarray datasets.

Description

This class provides a skeleton for the linkage of gene IDs or other identifiers with annotation information. The annotated data can subsequently be analysed using goCluster.

Slots

type:
Object of class "character", a description of the annotation type.
annoset:
Object of class "list", the annotation data in a list format. Each list element contains annotation data of a specific type. information for one specific data ID and holds annotation data in the format specified with the slot type.

Additional slots are described in the documentation of the clusterModule-class.

Methods

config
signature(object = "clusterAnnotation"): This function does nothing since this is an abstract class.
setup
signature(object = "clusterAnnotation"): This function returns an empty list since this is an abstract class.
setup<-
signature(object = "clusterAnnotation"): This function does nothing since this is an abstract class.
execute
signature(object = "clusterAnnotation"): This function does nothing since this is an abstract class.
execute<-
signature(object = "clusterAnnotation"): This function does nothing since this is an abstract class.
reset
signature(object = "clusterAnnotation"): This function resets the clusterset-slot to an empty list.
print
signature(object = "clusterAnnotation"): This function does nothing since this is an abstract class.

Author(s)

Gunnar Wrobel, http://www.gunnarwrobel.de.

See Also

goCluster-class, clusterModule-class, clusterData-class, clusterAnnotationGO-abp-class, clusterAnnotationChromosome-abp-class


[Package goCluster version 1.0.3 Index]