clusterData-class {goCluster} | R Documentation |
This class provides a container for microarray data.
This class provides a wrapper for exprSet
objects from bioconductor. It
provides a link to the annotation data in goCluster. A vector of
unique ids that connects each element (row) in the dataset with its
corresponding annotation terms has to be provided.
name
:"character"
, a
name for the dataset.dataset
:"exprSet"
, the dataset
for the analysis.uniqueid
:"character"
, the
unique id for each gene (row) in the dataset.anno
:"clusterAnnotation"
, the
annotation object that holds the annotation to this dataset.
Additional slots are described in the documentation of the
clusterModule-class
.
Class "clusterModule"
, directly.
signature(object = "clusterData")
: interactive
setup of the class. signature(object = "clusterData")
: returns the
configuration (including the dataset) of the object as a
list. This list can be used for the non-interactive setup of the
class.signature(object = "clusterData")
:
non-interactive setup of the class. The options are specified
using a list. signature(object = "clusterData")
: passes the
execute
-call to the annotation object. signature(object = "clusterData")
: passes the
execute<-
-call to the annotation object. signature(object = "clusterData")
: This only
conveys the reset signal to the clusterAnnotation
object. The dataset of the clusterData object will not be removed
by this reset method. A new goCluster
-object should be created for
each new dataset. signature(object = "clusterData")
: calls the
print function of the exprSet-object stored in the dataset slot. Gunnar Wrobel, http://www.gunnarwrobel.de.
goCluster-class
,
clusterAnnotation-class
,
setup
,
setup<-
,
execute
,
reset
.