getSNP {biomaRt}R Documentation

Retrieves SNP's between a given chromosome start and end position

Description

Retrieves SNP's between a given chromosome start and end position

Usage

getSNP( species = NULL, chromosome = NULL, start = NULL, end = NULL, mart = NULL)

Arguments

species Species information. A list of possible values for this argument can be obtained by the function getSpecies.
chromosome Chromosome name
start start position on given chromosome
end end position on given chromosome
mart object of class Mart, containing connections to the BioMart databases. You can creat such an object using the function martConnect.

Author(s)

Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck

See Also

Examples

## Not run: 
mart <- martConnect()

getSNP(chromosome = 8, start = 148350, end = 148612, species ="hsapiens", mart = mart)

martDisconnect(mart = mart)
## End(Not run)

[Package biomaRt version 1.0.4 Index]