getSNP {biomaRt} | R Documentation |
Retrieves SNP's between a given chromosome start and end position
getSNP( species = NULL, chromosome = NULL, start = NULL, end = NULL, mart = NULL)
species |
Species information. A list of possible values for this argument can be obtained by the function getSpecies. |
chromosome |
Chromosome name |
start |
start position on given chromosome |
end |
end position on given chromosome |
mart |
object of class Mart, containing connections to the BioMart databases. You can creat such an object using the function martConnect. |
Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck
## Not run: mart <- martConnect() getSNP(chromosome = 8, start = 148350, end = 148612, species ="hsapiens", mart = mart) martDisconnect(mart = mart) ## End(Not run)