arrayData |
Class arrayData, a simple container for raw data and related information |
arrayData-class |
Class arrayData, a simple container for raw data and related information |
as.exprSet |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
as.exprSet,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
as.RGList |
Class arrayData, a simple container for raw data and related information |
as.RGList,arrayData-method |
Class arrayData, a simple container for raw data and related information |
as.RGList,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
cbind.arrayData |
Cbind for objects of class arrayData |
cbind.exprSetRG |
Cbind for objects of class exprSetRG |
colCors |
Correlation coefficients between the corresponding columns (rows) of two matrices that have the same size. |
controlledApply |
controlledApply |
controlledSubsetting |
Subsetting of Arrays |
detectReplicas |
detectReplicas |
exprSetRG |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
exprSetRG-class |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
fdc |
FDC (false discovery count) |
getExprSetGreen |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetGreen,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetGreenMinusRed |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetGreenMinusRed,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetLogRatio |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetLogRatio,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetRed |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetRed,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetRedMinusGreen |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getExprSetRedMinusGreen,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getHybAttr |
Class arrayData, a simple container for raw data and related information |
getHybAttr,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getHybAttrGreen |
Class arrayData, a simple container for raw data and related information |
getHybAttrGreen,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getHybAttrList |
Class arrayData, a simple container for raw data and related information |
getHybAttrList,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getHybAttrRed |
Class arrayData, a simple container for raw data and related information |
getHybAttrRed,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getIndGreen |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getIndGreen,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getIndRed |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getIndRed,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
getIntensities |
Class arrayData, a simple container for raw data and related information |
getIntensities,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getSpotAttr |
Class arrayData, a simple container for raw data and related information |
getSpotAttr,arrayData-method |
Class arrayData, a simple container for raw data and related information |
getWeights |
Class arrayData, a simple container for raw data and related information |
getWeights,arrayData-method |
Class arrayData, a simple container for raw data and related information |
hybAttrList<-,arrayData-method |
Class arrayData, a simple container for raw data and related information |
initialize,arrayData-method |
Class arrayData, a simple container for raw data and related information |
initialize,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
intensities<-,arrayData-method |
Class arrayData, a simple container for raw data and related information |
interweave |
interweave |
normalise |
Normalisation of microarray data |
pDataGreen |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
pDataGreen,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
pDataRed |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
pDataRed,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
pDataSlide |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
pDataSlide,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataGreen |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataGreen,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataRed |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataRed,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataSlide |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
phenoDataSlide,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
plot.imageMatrix |
Visualisation of a matrix |
plotDistributions |
Visualisation of distributions |
processArrayData |
Automated processing of two colour DNA microarray data |
processArrayDataObject |
Automated processing and normalisation of an arrayData-object (part of function processArrayData) |
qualityDiagnostics |
Generates quality diagnostic plots |
qualityParameters |
Calculation of quality characteristics for DNA microarray hybridisations |
readIntensities |
readIntensities |
readpDataSlides |
Reads the description of all slides or channels |
removeSpots |
Remove specified spots from objects |
rowCors |
Correlation coefficients between the corresponding columns (rows) of two matrices that have the same size. |
show,arrayData-method |
Class arrayData, a simple container for raw data and related information |
show,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
simpleApply |
simpleApply |
slideMerge |
Averaging of two colour microarray replicas |
slideSubset |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
slideSubset,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |
spatialLayout |
Calculation of two dimensional coordinates |
spotAttr<-,arrayData-method |
Class arrayData, a simple container for raw data and related information |
spotMerge |
Averaging of spot replicas |
visualiseHybridisations |
Microarray intensity data are visualised with respect to their spatial layout |
visualiseQualityParameters |
Graphical representation of quality parameters |
weights<-,arrayData-method |
Class arrayData, a simple container for raw data and related information |
write.htmltable |
Write a data frame into an html table within a html page |
writeToFile |
Writes a textual representation of an exprSetRG and/or arrayData object |
[,arrayData-method |
Class arrayData, a simple container for raw data and related information |
[,exprSetRG-method |
Class exprSetRG for two colour DNA microarray data (extension of exprSet) |