GUI for affy analysis using limma package


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Documentation for package `affylmGUI' version 1.2.7

User Guides and Package Vignettes

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Help Pages

A C D E F G H I L N O P Q R S T U V

-- A --

AboutaffylmGUI Graphical User Interface for the limma microarray package
AboutCustomMenu Graphical User Interface for the limma microarray package
AboutNormalization Graphical User Interface for the limma microarray package
addMenuItem Graphical User Interface for the limma microarray package
affyHelp Graphical User Interface for the limma microarray package
affylmGUI Graphical User Interface for the limma microarray package
affylmGUIhelp Graphical User Interface for the limma microarray package
affyPlotMA Graphical User Interface for the limma microarray package
affyPlotMAcontrast Graphical User Interface for the limma microarray package

-- C --

ChooseCDF Graphical User Interface for the limma microarray package
ChooseContrastParameterization Graphical User Interface for the limma microarray package
chooseDir Graphical User Interface for the limma microarray package
ChooseEbayesStatistic Graphical User Interface for the limma microarray package
ComputeContrasts Graphical User Interface for the limma microarray package
ComputeLinearModelFit Graphical User Interface for the limma microarray package
CopyGraph Graphical User Interface for the limma microarray package

-- D --

DeleteContrastParameterization Graphical User Interface for the limma microarray package
DeleteCustomMenuItem Graphical User Interface for the limma microarray package
deleteItemFromList Graphical User Interface for the limma microarray package
DensityPlot Graphical User Interface for the limma microarray package

-- E --

evalRcode Graphical User Interface for the limma microarray package
ExportHTMLreport Graphical User Interface for the limma microarray package
ExportNormalizedExpressionValues Graphical User Interface for the limma microarray package
ExportTopTable Graphical User Interface for the limma microarray package

-- F --

fixSeps Graphical User Interface for the limma microarray package

-- G --

generalPlotFunction Graphical User Interface for the limma microarray package
GetComponentsToExportInHTMLreport Graphical User Interface for the limma microarray package
GetContrast Graphical User Interface for the limma microarray package
GetContrastNamesForHeatDiagram Graphical User Interface for the limma microarray package
GetContrastParameterizationName Graphical User Interface for the limma microarray package
GetContrasts Graphical User Interface for the limma microarray package
GetCustomMenuItemNum Graphical User Interface for the limma microarray package
GetDEcutoff Graphical User Interface for the limma microarray package
GetGeneLabelsOptions Graphical User Interface for the limma microarray package
GetJpegOrPngParams Graphical User Interface for the limma microarray package
GetJpegOrPngX11Params Graphical User Interface for the limma microarray package
GetlimmaDataSetName Graphical User Interface for the limma microarray package
GetMenuName Graphical User Interface for the limma microarray package
GetMultipleContrasts Graphical User Interface for the limma microarray package
GetNormalizationMethod Graphical User Interface for the limma microarray package
getPackageVersion Graphical User Interface for the limma microarray package
GetParameterizationName Graphical User Interface for the limma microarray package
GetPlotLabels Graphical User Interface for the limma microarray package
GetPlotSize Graphical User Interface for the limma microarray package
GetPlotTitle Graphical User Interface for the limma microarray package
GetPValueCutoff Graphical User Interface for the limma microarray package
GetRNATypesFrom.ContrastsFromDropDowns.String Graphical User Interface for the limma microarray package
GetSetNames Graphical User Interface for the limma microarray package
GetSlideNum Graphical User Interface for the limma microarray package
GetSlideNums Graphical User Interface for the limma microarray package
GetWhichProbes Graphical User Interface for the limma microarray package
GetWtAreaParams Graphical User Interface for the limma microarray package
GetWtFlagParams Graphical User Interface for the limma microarray package

-- H --

HeatDiagramDialog Graphical User Interface for the limma microarray package
HeatDiagramPlot Graphical User Interface for the limma microarray package
HTMLplotUsingFunction Graphical User Interface for the limma microarray package

-- I --

ImageArrayPlot Graphical User Interface for the limma microarray package
ImageQualityPlot Graphical User Interface for the limma microarray package
initGlobals Graphical User Interface for the limma microarray package
IntensityHistogram Graphical User Interface for the limma microarray package

-- L --

limmaHelp Graphical User Interface for the limma microarray package
LogOddsPlot Graphical User Interface for the limma microarray package

-- N --

NewLimmaFile Graphical User Interface for the limma microarray package
NormalizedIntensityBoxPlot Graphical User Interface for the limma microarray package
NormalizeNow Graphical User Interface for the limma microarray package
nstrstr Graphical User Interface for the limma microarray package

-- O --

onDestroy Graphical User Interface for the limma microarray package
onExit Graphical User Interface for the limma microarray package
OpenALimmaFile Graphical User Interface for the limma microarray package
OpenCDFandTargetsfiles Graphical User Interface for the limma microarray package
OpenCDFFile Graphical User Interface for the limma microarray package
OpenLimmaFile Graphical User Interface for the limma microarray package
OpenTargetsFile Graphical User Interface for the limma microarray package

-- P --

PlotOptions Graphical User Interface for the limma microarray package

-- Q --

QQTplot Graphical User Interface for the limma microarray package

-- R --

RawIntensityBoxPlot Graphical User Interface for the limma microarray package
Require Graphical User Interface for the limma microarray package
Resize Graphical User Interface for the limma microarray package

-- S --

SaveAsLimmaFile Graphical User Interface for the limma microarray package
SaveGraphAsJpeg Graphical User Interface for the limma microarray package
SaveGraphAsPDF Graphical User Interface for the limma microarray package
SaveGraphAsPNG Graphical User Interface for the limma microarray package
SaveGraphAsPostscript Graphical User Interface for the limma microarray package
SaveLimmaFile Graphical User Interface for the limma microarray package
SetupPlotKeyBindings Graphical User Interface for the limma microarray package
SetupPlotMenus Graphical User Interface for the limma microarray package
SetWD Graphical User Interface for the limma microarray package
showTopTable Graphical User Interface for the limma microarray package
SimplifyContrastsExpression Graphical User Interface for the limma microarray package
strstr Graphical User Interface for the limma microarray package

-- T --

tclArrayVar Graphical User Interface for the limma microarray package
TclRequire Graphical User Interface for the limma microarray package
topTable2 Graphical User Interface for the limma microarray package
toptable2 Graphical User Interface for the limma microarray package
Try Graphical User Interface for the limma microarray package
TryReadImgProcFile Graphical User Interface for the limma microarray package

-- U --

UpDownOrBoth Graphical User Interface for the limma microarray package

-- V --

vennDiagramaffylmGUI Graphical User Interface for the limma microarray package
VennDiagramPlot Graphical User Interface for the limma microarray package
ViewContrastsMatrixAsPairs Graphical User Interface for the limma microarray package
ViewContrastsMatrixInTable Graphical User Interface for the limma microarray package
ViewExistingContrastParameterization Graphical User Interface for the limma microarray package
ViewRNATargets Graphical User Interface for the limma microarray package