symbols.phylog {ade4} | R Documentation |
symbols.phylog
draws the phylogenetic tree and represents the values of
the variable by symbols (squares or circles) which size is proportional to value.
White symbols correspond to values which are below the mean, and black symbols
correspond to values which are over.
symbols.phylog(phylog, circles, squares, csize = 1, clegend = 1, sub = "", csub = 1, possub = "topleft")
phylog |
an object of class phylog |
circles |
a vector giving the radii of the circles |
squares |
a vector giving the length of the sides of the squares |
csize |
a size coefficient for symbols |
clegend |
a character size for the legend used by par("cex")*clegend |
sub |
a string of characters to be inserted as legend |
csub |
a character size for the legend, used with par("cex")*csub |
possub |
a string of characters indicating the sub-title position ("topleft", "topright", "bottomleft", "bottomright") |
Daniel Chessel chessel@biomserv.univ-lyon1.fr
Sébastien Ollier ollier@biomserv.univ-lyon1.fr
table.phylog
and dotchart.phylog
for many variables
data(mjrochet) mjrochet.phy <- newick2phylog(mjrochet$tre) tab0 <- data.frame(scalewt(log(mjrochet$tab))) par(mfrow=c(3,2)) for (j in 1:6) { w <- tab0[,j] symbols.phylog(phylog = mjrochet.phy, w, csi = 1.5, cleg = 1.5, sub = names(tab0)[j], csub = 3) } par(mfrow=c(1,1))