mstree {ade4} | R Documentation |
Minimal Spanning Tree
mstree(xdist, ngmax = 1)
xdist |
an object of class dist containing an observed dissimilarity |
ngmax |
a component number (default=1). Select 1 for getting classical MST. To add n supplementary edges k times: select k+1. |
returns an object of class neig
Daniel Chessel chessel@biomserv.univ-lyon1.fr
data(mafragh) maf.coa = dudi.coa(mafragh$flo, scan = FALSE) maf.mst = mstree(dist.dudi(maf.coa), 1) s.label(maf.coa$li, clab = 0, cpoi = 2, neig = maf.mst, cnei = 1) xy = data.frame(x = runif(20), y = runif(20)) par(mfrow = c(2,2)) for (k in 1:4) { neig = mstree (dist.quant(xy,1), k) s.label(xy, xlim = c(0,1), ylim = c(0,1), addax = FALSE, neig = neig) }