bacteria {ade4}R Documentation

Genomes of 43 Bacteria

Description

bacteria is a list containing 43 species and genomic informations : codons, amino acid and bases.

Usage

data(bacteria)

Format

This list contains the following objects:

code
is a factor with the amino acid names for each codon.
espcodon
is a data frame 43 species 64 codons.
espaa
is a data frame 43 species 21 amino acid.
espbase
is a data frame 43 species 4 bases.

Source

Data prepared by J. Lobry lobry@biomserv.univ-lyon1.fr starting from:
http://www.tigr.org/tdb/mdb/mdbcomplete.html

Examples

data(bacteria)
names(bacteria$espcodon)
names(bacteria$espaa)
names(bacteria$espbase)
sum(bacteria$espcodon) # 22,619,749 codons
scatter.coa(dudi.coa(bacteria$espcodon, scann = FALSE), 
    posi = "bottom")

[Package ade4 version 1.4-0 Index]