ALL |
Acute Lymphoblastic Leukemia Data from the Ritz Laboratory |
Bdists |
Distance matrices for the BCR/ABL and NEG subgroups. |
combGOGraph |
Defunct Functions in GOstats Package |
compCorrGraph |
A function to compute a correlation based graph from Gene Expression Data |
compGdist |
A function to compute the distance between pairs of nodes in a graph. |
dropECode |
Drop GO labels for specified Evidence Codes |
enumPairs |
Triad Functions |
getEvidence |
Get the Evidence codes for a set of GO terms. |
getGOChildren |
Functions to Access GO data. |
getGOOntology |
Functions to Access GO data. |
getGOParents |
Functions to Access GO data. |
getGOTerm |
Functions to Access GO data. |
getOntology |
Get GO terms for a specified ontology |
GOGraph |
Construct the GO graph given a set of leaves. |
GOHyperG |
Hypergeometric Tests for GO |
GOLeaves |
Identify the leaves in a GO Graph |
GOstats-defunct |
Defunct Functions in GOstats Package |
hasGOannote |
Check for GO annotation |
idx2dimnames |
Index to Dimnames |
isTriad |
Triad Functions |
makeGOGraph |
Construct a GO Graph |
Ndists |
Distance matrices for the BCR/ABL and NEG subgroups. |
notConn |
Find genes that are not connected to the others. |
oneGOGraph |
Construct the GO graph given a set of leaves. |
reduce2Degreek |
Triad Functions |
shortestPath |
Shortest Path Analysis |
simLL |
Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
simLP |
Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
simUI |
Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
triad |
Triad Functions |
triadCensus |
Triad Functions |