Tools for manipulating GO and microarrays.


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Documentation for package `GOstats' version 1.1.3

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ALL Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
Bdists Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph Defunct Functions in GOstats Package
compCorrGraph A function to compute a correlation based graph from Gene Expression Data
compGdist A function to compute the distance between pairs of nodes in a graph.
dropECode Drop GO labels for specified Evidence Codes
enumPairs Triad Functions
getEvidence Get the Evidence codes for a set of GO terms.
getGOChildren Functions to Access GO data.
getGOOntology Functions to Access GO data.
getGOParents Functions to Access GO data.
getGOTerm Functions to Access GO data.
getOntology Get GO terms for a specified ontology
GOGraph Construct the GO graph given a set of leaves.
GOHyperG Hypergeometric Tests for GO
GOLeaves Identify the leaves in a GO Graph
GOstats-defunct Defunct Functions in GOstats Package
hasGOannote Check for GO annotation
idx2dimnames Index to Dimnames
isTriad Triad Functions
makeGOGraph Construct a GO Graph
Ndists Distance matrices for the BCR/ABL and NEG subgroups.
notConn Find genes that are not connected to the others.
oneGOGraph Construct the GO graph given a set of leaves.
reduce2Degreek Triad Functions
shortestPath Shortest Path Analysis
simLL Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
simLP Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
simUI Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
triad Triad Functions
triadCensus Triad Functions