DNAcopy-internal {DNAcopy}R Documentation

Internal DNAcopy functions

Description

Internal functions of package DNAcopy.

Usage

changepoints(genomdat, data.type = "logratio", alpha = 0.01, nperm
                 = 10000, window.size = NULL, overlap = 0.25, 
                 trimmed.SD = NULL, undo.splits = "none", 
                 undo.prune = 0.05, undo.SD = 3, verbose = 1)
changepoints.prune(genomdat, lseg, change.cutoff=0.05)
changepoints.sdundo(genomdat, lseg, trimmed.SD, change.SD=3)
trimmed.variance(genomdat, trim=0.025)
inflfact(trim)

Details

These are not to be called directly by the user


[Package DNAcopy version 1.1.2 Index]