KEGGPkgbuilder {AnnBuilder} | R Documentation |
This function generates a data package with rda files mapping KEGG pathway or enzyme names to ids and vice versa. The source files for making the mapping are from the Internet.
KEGGPkgBuilder(pkgPath, pkgName = "KEGG", version = "1.0.1", author = list(author = "who",maintainer = "who@email.com")) getEIdNName(enzymeURL) getKEGGFile(whichOne, organism = "hsa") getKEGGGeneMap(organism = "Homo sapiens"))
pkgPath |
A character string for the name of path to which the data package will be stored. |
pkgName |
A character string for the name of the data package. |
version |
A character string for the version number of the system by which the data package is generated. |
author |
A list of character strings with one element being name for the name of the author and another being address being the email address of the author |
organism |
organism a character string for the name of the
organism of interest |
whichOne |
A charcter string for the name of file type. Valid values include "path" or "enzyme" |
enzymeURL |
A character string for the URL from which the source file for enzyme data will be downloaded. |
The data package produced will have the normal structure of an R package (i. g. with R, man, data, and src directories) under a directory defined by pkgName under pkgPath.
This function does not return any value.
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinformatics functionalities through R.
Jianhua Zhang
An Introduction to R - Writting R Extensions.