degMA.Rd
MA-plot addaptation to show the shrinking effect.
degMA(results, title = NULL, label_points = NULL, label_column = "symbol", limit = NULL, diff = 5, raw = FALSE, correlation = FALSE)
results | DEGSet class. |
---|---|
title | Optional. Plot title. |
label_points | Optionally label these particular points. |
label_column | Match label_points to this column in the results. |
limit | Absolute maximum to plot on the log2FoldChange. |
diff | Minimum difference between logFoldChange before and after shrinking. |
raw | Whether to plot just the unshrunken log2FC. |
correlation | Whether to plot the correlation of the two logFCs. |
MA-plot ggplot.
#>#>#>#>#>#>#>#>#>degMA(res[["condition_B_vs_A"]])#> Warning: Transformation introduced infinite values in continuous x-axis#> Warning: Removed 5 rows containing missing values (geom_point).#> Warning: Removed 84 rows containing missing values (geom_point).