aREA {viper} | R Documentation |
This function performs wREA enrichment analysis on a set of signatues
aREA(eset, regulon, method = c("auto", "matrix", "loop"), minsize = 20, cores = 1, wm = NULL, verbose = FALSE)
eset |
Matrix containing a set of signatures, with samples in columns and traits in rows |
regulon |
Regulon object |
method |
Character string indicating the implementation, either auto, matrix or loop |
minsize |
Interger indicating the minimum allowed size for the regulons |
cores |
Integer indicating the number of cores to use (only 1 in Windows-based systems) |
wm |
Optional numeric matrix of weights (0; 1) with same dimension as eset |
verbose |
Logical, whether a progress bar should be shown |
List of two elements, enrichment score and normalized enrichment score