generateIUPACByKmers {transite} | R Documentation |
Generates a compact logo of a motif based on IUPAC codes given by a character vector of k-mers
generateIUPACByKmers(kmers, code = NULL)
kmers |
character vector of k-mers |
code |
if IUPAC code table has already been initialized by
|
IUPAC RNA nucleotide code:
A | Adenine |
C | Cytosine |
G | Guanine |
U | Uracil |
R | A or G |
Y | C or U |
S | G or C |
W | A or U |
K | G or U |
M | A or C |
B | C or G or U |
D | A or G or U |
H | A or C or U |
V | A or C or G |
N | any base |
the IUPAC string of the binding site
http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html
Other motif functions: generateIUPACByMatrix
,
generateKmersFromIUPAC
,
getMotifById
, getMotifByRBP
,
getMotifs
, getPPM
,
initIUPAClookupTable
,
motifsMetaInfo
, setMotifs
generateIUPACByKmers(c("AACCAA", "AACCGG", "CACCGA"))