readWholeGenomeAnnotation {srnadiff} | R Documentation |
Segmentation using an annotation file that contains every genomic feature; it extracts the miRNAs.
readWholeGenomeAnnotation(fileName)
fileName |
The annotation file name in GFF/GTF format. |
A GRanges.
dir <- system.file("extdata", package="srnadiff", mustWork = TRUE) gtfFile <- file.path(dir, "Homo_sapiens.GRCh38.76.gtf.gz") annotation <- readWholeGenomeAnnotation(gtfFile)