readMiRBasePreAnnotation {srnadiff}R Documentation

Segmentation using an miRBase annotation file and use precursor miRNAs.

Description

Segmentation using an miRBase annotation file and use precursor miRNAs.

Usage

readMiRBasePreAnnotation(fileName)

Arguments

fileName

The annotation file name in GFF/GTF format.

Value

A GRanges.

Examples

dir        <- system.file("extdata", package="srnadiff", mustWork = TRUE)
gffFile    <- file.path(dir, "mirbase21_GRCh38.gff3")
annotation <- readMiRBasePreAnnotation(gffFile)


[Package srnadiff version 1.4.0 Index]