test_tool_cwlrun {sevenbridges} | R Documentation |
Test tools locally cwl-runner (https://github.com/common-workflow-language/cwltool)
test_tool_cwlrun(rabix_tool, inputs = list())
rabix_tool |
rabix tool from Tool class |
inputs |
input parameters declared as json (or yaml) string |
cwl-runner stdout
## Not run: inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}' rbx <- <define rabix tool> set_test_env("tengfei/testenv", "<mount_dir>") test_tool_cwlrun(rbx, inputs) ## End(Not run)