median_replicates {scsR} | R Documentation |
perform the median of the replicates (i.e. group by oligo sequence and takes the median of the score value ).
median_replicates(screen, seedColName = "seed7", scoreColName = "score", geneColName = "GeneID", seqColName="siRNA_seq", spAvgColName = NULL)
screen |
data frame containing the results of the siRNA experiment. |
seedColName |
name of the column that contains the seed of the sequence (character vector) |
scoreColName |
name of the column that contains the score of the screen (character vector) |
geneColName |
name of the column that contains the names of the genes in the screen (character vector) |
seqColName |
name of the column that contains the names of the sequences in the screen |
spAvgColName |
name of the column that contains the names of the genes in the screen (character vector) |
input data frame after having performed the median of the replicates
Andrea Franceschini
data(uuk_screen) mr <- median_replicates(uuk_screen)