getBatchInteractions {r3Cseq} | R Documentation |
Calculate z-score, assign p-value and q-value to each interaction regions for replicates data sets
getBatchInteractions(object,method=c("union","intersection"),smoothing.parameter=0.1,fdr=0.05)
object |
r3Cseq object |
method |
character. The method for combining biological replicates for 3C-Seq analysis (default = "union") |
smoothing.parameter |
A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1) |
fdr |
A level at which to control the FDR. Must be in (0,1] (default=0.05) |
The interaction regions show in the RangedData
S. Thongjuea
getInteractions vsmooth.spline
#See the vignette