getBatchReadCountPerWindow {r3Cseq}R Documentation

count reads per window size for replicates analysis

Description

Counts the number of reads from 3C-Seq data per each window size for replicates analysis

Usage

getBatchReadCountPerWindow(object,windowSize=5e3,nFragmentExcludedReadsNearViewpoint=2,mode=c("non-overlapping", "overlapping"))

Arguments

object

r3CseqInBatch object

windowSize

Numeric. non-overlapping window size for counting reads (default=5e3)

nFragmentExcludedReadsNearViewpoint

Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments will be removed from the analysis (default=2)

mode

character. The window-based modes analysis (default="non-overlapping")

Value

The RangedData represents the number of reads per each window size

Author(s)

S. Thongjuea

See Also

getReadCountPerRestrictionFragment, getBatchReadCountPerRestrictionFragment, getReadCountPerWindow,

Examples

  #See the vignette	

[Package r3Cseq version 1.30.0 Index]