calculateRPM {r3Cseq}R Documentation

calculate read per million (RPM)

Description

Normalize 3C-Seq data by transforming raw reads to read per million per each region

Usage

calculateRPM(object,normalized_method=c("powerlawFittedRPM","normalRPM"))

Arguments

object

r3Cseq object

normalized_method

character. method of normalization (default=powerlawFittedRPM)

Author(s)

S. Thongjuea

See Also

contrRPM, expRPM, calculateBatchRPM

Examples

#See the vignette

[Package r3Cseq version 1.30.0 Index]