plotDomainogramNearViewpoint {r3Cseq}R Documentation

Plot domainogram of interaction regions near the viewpoint

Description

Plot domainogram of interaction regions near the viewpoint

Usage

plotDomainogramNearViewpoint(object,smoothing.parameter=0.1,distance=5e5,maximum_window=25e3,view=c("experiment","control","both"))

Arguments

object

r3Cseq or r3CseqInBatch object

smoothing.parameter

A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1)

distance

Numeric. The distance relative to the viewpoint (default=5e5)

maximum_window

Numeric. The maximum windowing (default=25e3). We normally compute the interaction regions per window starting from 2Kb to maximum window (default=25kb) to make the interaction matrix for visualizing the domainogram.

view

character. The selected view of data (default="experiment")

Value

Plots of domainogram for interaction regions close to the viewpoint

Author(s)

S. Thongjuea

See Also

plotOverviewInteractions, plotInteractionsPerChromosome, plotInteractionsNearViewpoint

Examples


	# See the vignette

[Package r3Cseq version 1.30.0 Index]