addNewSamples {qsea} | R Documentation |
This function allows the qseaSet to be extended by new samples, provided in the sample table.
addNewSamples(qs, sampleTable, force=FALSE, parallel=FALSE)
qs |
The qseaSet object to be extended |
sampleTable |
data.frame, describing the samples. Must be in same format as getSampleTable(qs) |
force |
force adding of new samples, even if existing CNV or enrichment information requires recomputation |
parallel |
parallel processing of alignment files |
An object of class qseaSet, including the new samples.
Mathias Lienhard
library("BSgenome.Hsapiens.UCSC.hg19") data(samplesNSCLC, package="MEDIPSData") path=system.file("extdata", package="MEDIPSData") samples_NSCLC$file_name=paste0(path,"/",samples_NSCLC$file_name ) originalQseaSet=createQseaSet(sampleTable=samples_NSCLC[1:4,], BSgenome="BSgenome.Hsapiens.UCSC.hg19", chr.select="chr22", window_size=500) originalQseaSet=addCoverage(originalQseaSet, uniquePos=TRUE, paired=TRUE) qseaSet=addNewSamples(originalQseaSet, samples_NSCLC)