createOptimalSurvData {psichomics}R Documentation

Create survival data based on a PSI cutoff

Description

Data is presented in the table for statistical analyses

Usage

createOptimalSurvData(eventPSI, clinical, censoring, event, timeStart,
  timeStop, match, patients, samples)

Arguments

eventPSI

Numeric: alternative splicing quantification for multiple samples relative to a single splicing event

clinical

Data frame: clinical data

censoring

Character: censor using "left", "right", "interval" or "interval2"

event

Character: name of column containing time of the event of interest

timeStart

Character: name of column containing starting time of the interval or follow up time

timeStop

Character: name of column containing ending time of the interval (only relevant for interval censoring)

match

Matrix: match between samples and patients

patients

Character: patient identifiers (only required if the clinical argument is not handed)

samples

Character: samples to use when assigning values per patient (if NULL, all samples will be used)

Value

Survival data including optimal PSI cutoff, minimal survival p-value and HTML element required to plot survival curves


[Package psichomics version 1.10.2 Index]