plotGroupIndependence {psichomics} | R Documentation |
Plot -log10(p-values) of the results obtained after multiple group independence testing
plotGroupIndependence(groups, top = 50, textSize = 10, colourLow = "lightgrey", colourMid = "blue", colourHigh = "orange", colourMidpoint = 150)
groups |
|
top |
Integer: number of attributes to render |
textSize |
Integer: size of the text |
colourLow |
Character: name or HEX code of colour for lower values |
colourMid |
Character: name or HEX code of colour for middle values |
colourHigh |
Character: name or HEX code of colour for higher values |
colourMidpoint |
Numeric: midpoint to identify middle values |
ggplot
object
parseCategoricalGroups
and
testGroupIndependence
elements <- paste("patients", 1:50) ref <- elements[10:50] groups <- list(race=list(asian=elements[1:3], white=elements[4:7], black=elements[8:10]), region=list(european=elements[c(4, 5, 9)], african=elements[c(6:8, 10:50)])) groupTesting <- testGroupIndependence(ref, groups, elements) plotGroupIndependence(groupTesting)