flags {oligoClasses} | R Documentation |
Used to flag SNPs with low minor allele frequencies, or for possible problems during the CN estimation step. Currently, this is primarily more for internal use.
flags(object)
object |
An object of class |
A matrix
or ff_matrix
object with rows
corresponding to markers and columns corresponding to batch.
x <- matrix(runif(250*96*2, 0, 2), 250, 96*2) test1 <- new("CNSet", alleleA=x, alleleB=x, call=x, callProbability=x, batch=as.character(rep(letters[1:2], each=96))) dim(flags(test1))