readTotals {ngsReports} | R Documentation |
Get the read totals from one or more FASTQC reports
readTotals(x)
x |
Can be a |
A tibble
with the columns Filename
and
Total_Sequences
# Get the files included with the package packageDir <- system.file("extdata", package = "ngsReports") fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE) # Load the FASTQC data as a FastqcDataList object fdl <- FastqcDataList(fl) # Print the read totals readTotals(fdl)