projectFromNetworkRecombine,matrix-method {netSmooth} | R Documentation |
Combine gene expression from smoothed space (that of the network) with the expression of genes that were not smoothed (not present in network)
## S4 method for signature 'matrix' projectFromNetworkRecombine(original_expression, smoothed_expression)
original_expression |
the non-smoothed expression |
smoothed_expression |
the smoothed gene expression, in the space of the genes defined by the network |
filepath |
String: Path to location where hdf5 output file is supposed to be saved. Will be ignored when regular matrices or SummarizedExperiment are used as input. |
a matrix in the dimensions of original_expression, where values that are present in smoothed_expression are copied from there.