findNonAligned {methVisual} | R Documentation |
Determination of non-aligned CpG positions
findNonAligned(methData)
methData |
List; contains information on the pairwise alignments, and methylated CpG motifs |
Determination of aligned and not-aligned positions of CpGs of examined sequences in relation to genomic sequence.
Integer matrix, where columns=CpG positions, row=clone sequences. 0 = not methylated, 1 = methylated, 2 = not aligned
Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>
data(methData) findNonAligned(methData)