makeDataMethGFF {methVisual} | R Documentation |
Create methData object from processed .gff files
makeDataMethGFF(dir,chr,start,end,meth_value)
dir |
String; The local directory where the .gff files are located |
chr |
String; Chromosome under study |
start |
Integer; The start position of genomic region under study |
end |
Integer; The end position of the genomic region under study |
meth_value |
double; level of methylation on CpG |
This function reads and processes GFF files and creates a list object (like the one generated by MethAlignNW()) which can be later analyzed through the visualization, classification and clustering functions.
methData object
Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>
methGFF <- makeDataMethGFF(dir=system.file(package="methVisual", "examples/GFF"),chr="7",start=0,end=70,0.75) methGFF