SkylineExperiment {lipidr}R Documentation

Constructor for Skyline experiment from list of assays

Description

Constructor for Skyline experiment from list of assays

Usage

SkylineExperiment(assay_list, metadata, colData = NULL, rowData = NULL)

Arguments

assay_list

A list or SimpleList of matrix-like elements, or a matrix-like object. Passed to SummarizedExperiment().

metadata

A list containing arbirary information about the experiment. It should at least contain 2 elements:

  • dimnames 2-element character vector with dimension names

  • summarized Has transitions been summarized?

colData

An optional DataFrame describing the samples (contains clinical information). Row names, if present, become the column names of the SkylineExperiment.

rowData

A DataFrame object describing the rows (contains generated lipid annotations). Row names, if present, become the row names of the SummarizedExperiment object. The number of rows of the DataFrame must be equal to the number of rows of the matrices in assays.

Value

SkylineExperiment object


[Package lipidr version 1.0.0 Index]