read_gmt {ideal} | R Documentation |
Returns a list of pathways from a GMT file.
read_gmt(gmtfile)
gmtfile |
A character value, containing the location of the GMT formatted file. It can also be a file found online |
A list of vectors, one for each pathway in the GMT file.
# this example reads in the freely available pathways from wikipathways mysigs <- read_gmt( "http://data.wikipathways.org/20180910/gmt/wikipathways-20180910-gmt-Homo_sapiens.gmt") head(mysigs) # see how the gene identifiers are encoded as ENTREZ id