deseqresult2DEgenes {ideal} | R Documentation |
Generate a tidy table with the DE genes from the results of DESeq
deseqresult2DEgenes(deseqresult, FDR = 0.05)
deseqresult |
A |
FDR |
Numeric value, the significance level for thresholding adjusted p-values |
A "tidy" data.frame with only genes marked as differentially expressed
# with simulated data... library(DESeq2) dds <- DESeq2::makeExampleDESeqDataSet(n=100, m=8, betaSD = 2) dds <- DESeq(dds) res <- results(dds) deseqresult2DEgenes(res)