splitBAM_byRepindex {icetea}R Documentation

Split the composite BAM file using replicate indexes (MAPCap data)

Description

Split the composite BAM file using replicate indexes (MAPCap data)

Usage

splitBAM_byRepindex(bamFile, outfile_prefix, ncores = 1)

Arguments

bamFile

character. Path to a mapped BAM file

outfile_prefix

character. prefix for output file (replicates IDs will be added as RR/YY)

ncores

integer. Number of cores to use for parallel processing

Value

Filtered files by replicate Index

Examples


bam <- system.file("extdata", "bam/embryo1.bam", package = "icetea")
splitBAM_byRepindex(bamFile = bam, outfile_prefix = "testSplit", ncores = 1)


[Package icetea version 1.2.0 Index]