db_get {hypeR}R Documentation

Fetch downloaded gene sets from msigdb

Description

Fetch downloaded gene sets from msigdb

Usage

db_get(msigdb_info, symbol = c("C1", "C2.CGP", "C2.CP", "C2.CP.BIOCARTA",
  "C2.CP.KEGG", "C2.CP.REACTOME", "C3.MIR", "C3.TFT", "C4.CGN", "C4.CM",
  "C5.BP", "C5.CC", "C5.MF", "C6", "C7", "H"))

Arguments

msigdb_info

A list containing the gene set directory and version number of gene sets

symbol

A symbol corresponding to a msigdb gene set

Value

A list of gene sets

Examples

msigdb_info <- download_msigdb()
REACTOME <- db_get(msigdb_info, "C2.CP.REACTOME")


[Package hypeR version 1.00.0 Index]