db_get {hypeR} | R Documentation |
Fetch downloaded gene sets from msigdb
db_get(msigdb_info, symbol = c("C1", "C2.CGP", "C2.CP", "C2.CP.BIOCARTA", "C2.CP.KEGG", "C2.CP.REACTOME", "C3.MIR", "C3.TFT", "C4.CGN", "C4.CM", "C5.BP", "C5.CC", "C5.MF", "C6", "C7", "H"))
msigdb_info |
A list containing the gene set directory and version number of gene sets |
symbol |
A symbol corresponding to a msigdb gene set |
A list of gene sets
msigdb_info <- download_msigdb() REACTOME <- db_get(msigdb_info, "C2.CP.REACTOME")