download_msigdb {hypeR}R Documentation

Download all gene sets from msigdb for a given species

Description

Download all gene sets from msigdb for a given species

Usage

download_msigdb(species = "Homo sapiens", output_dir = NULL)

Arguments

species

A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)

output_dir

A directory path where gene sets are downloaded instead of to the package location

Value

A list containing the output directory and version number of gene sets

Examples

msigdb_info <- download_msigdb()


[Package hypeR version 1.00.0 Index]