getFeatureCounts {girafe} | R Documentation |
get the read counts for a supplied set of genomic features
getFeatureCounts(AI, FG, nameColumn = "Name", fractionIncluded = 1, returnType = "AlignedGenomeIntervals", mem.friendly = FALSE)
AI |
|
FG |
|
nameColumn |
character indicating which column of the object
|
fractionIncluded |
double; which fraction of an interval needs to be included in a feature in order to count for the feature |
returnType |
one of |
mem.friendly |
logical; passed on to |
depends on argument returnType
:
one of AlignedGenomeIntervals
or
a named integer
Joern Toedling