directPlot {gQTLstats}R Documentation

visualize relationship between empirical and modeled FDR based on analysis of a gQTL store

Description

visualize relationship between empirical and modeled FDR based on analysis of a gQTL store

Usage

directPlot(FDRsupp)

Arguments

FDRsupp

instance of FDRsupp-class

Details

This plot is used to show the degree of fit between a smooth model relating modeled FDR to empirical FDR, and the empirical FDR themselves. It should be used in conjunction with txsPlot.

It is possible for an implausible squiggly model to yield perfect agreement for all empirical FDR estimates. See the example.

Examples

data(filtFDR)
directPlot(filtFDR)

[Package gQTLstats version 1.16.0 Index]