setFDRfunc {gQTLstats} | R Documentation |
estimate and store function relating association scores to approximate plug-in FDR
setFDRfunc(FDRsupp, fudge = 1e-06, zthresh = 30, maxch = 30, ...)
FDRsupp |
instance of |
fudge |
if FDR is zero, a log or logistic transform will fail; we add the small
positive number |
zthresh |
for association scores greater than this value, a hard value of FDR 0 is assigned |
maxch |
the model for the functional relationship between association and FDR is subset to observations for which association chisq score is no greater than 1.1*maxch |
... |
arguments passed to |
returns an updated FDRsupp-class
instance
data(filtFDR) filtFDR2 = setFDRfunc(filtFDR)