fCI.call.by.index {fCI} | R Documentation |
top level function call to find targets based on expression data and control & case indexes
fCI.call.by.index(wt.indexes, df.indexes, data.file, use.normalization = FALSE, npci=NULL, short.report=TRUE)
wt.indexes |
The wild type sample column indexes in the matrix, i.e. 1,2 |
df.indexes |
The diseases type sample column indexes in the matrix, i.e. 3,4 |
data.file |
The expression matrix |
use.normalization |
boolean value whether you want the data to be normalized or not |
npci |
the fCI object |
short.report |
whether you want to have a report summary |
TBD
rtable |
A data frame of the detected targets |
TBD
Shaojun Tang
http://software.steenlab.org/fCI/
TBD
wt.indexes=1:2 df.indexes=3:4 data.file=data.frame(matrix(sample(3:100, 100*4, replace=TRUE), 100,4)) use.normalization=FALSE npci=NULL short.report=TRUE fCI.call.by.index(wt.indexes, df.indexes, data.file, use.normalization, npci, short.report)