fCI.call.by.index {fCI}R Documentation

top level function call to find targets based on expression data and control & case indexes

Description

top level function call to find targets based on expression data and control & case indexes

Usage

fCI.call.by.index(wt.indexes, df.indexes, data.file, use.normalization = FALSE, 
  npci=NULL, short.report=TRUE)

Arguments

wt.indexes

The wild type sample column indexes in the matrix, i.e. 1,2

df.indexes

The diseases type sample column indexes in the matrix, i.e. 3,4

data.file

The expression matrix

use.normalization

boolean value whether you want the data to be normalized or not

npci

the fCI object

short.report

whether you want to have a report summary

Details

TBD

Value

rtable

A data frame of the detected targets

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples


wt.indexes=1:2
df.indexes=3:4
data.file=data.frame(matrix(sample(3:100, 100*4, replace=TRUE), 100,4))
use.normalization=FALSE
npci=NULL
short.report=TRUE
fCI.call.by.index(wt.indexes, df.indexes, data.file, use.normalization, 
  npci, short.report)


[Package fCI version 1.14.0 Index]