deg.up.down.info {fCI}R Documentation

find targets and their detailed expression changes

Description

given expression matrix, find targets and their detailed expression changes

Usage

deg.up.down.info(wt.index.in.list, df.index.in.list, npci, 
use.normalization = FALSE, target.ratio = 0.5)

Arguments

wt.index.in.list

a list of numeric values representing the column indexes for control samples

df.index.in.list

a list of numeric values representing the column indexes for experimental samples

npci

the object npci

use.normalization

a boolean value indicating if the normalization will be applied or not

target.ratio

a numeric value indicating the expected fold changes, i.e, 1.5

Details

TBD

Value

expression ratio

a dataframe of fCI gene expression ratios (folds) defined by control-control index and control-case index

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

  print("TBC")

[Package fCI version 1.14.0 Index]